Pairwise Alignments

Query, 443 a.a., T6SS component TssK (ImpJ/VasE) from Variovorax sp. SCN45

Subject, 444 a.a., type VI secretion system baseplate subunit TssK from Vibrio cholerae E7946 ATCC 55056

 Score =  334 bits (856), Expect = 4e-96
 Identities = 174/442 (39%), Positives = 273/442 (61%), Gaps = 3/442 (0%)

Query: 4   RTKVVWSEGMLLQPQHLQQSERHADHARHVLLRTTTPYAWGFAELEIDAAALTLGKLALV 63
           R +V+W+EG+ ++PQH QQ +R+ ++     L T + Y +G +EL ++   L+ G++A+ 
Sbjct: 4   RNRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIE 63

Query: 64  RAVGVFGDGTVFDMPAVDPLPEPIDIP-SGMRDEAVVLALPLRRAGAREADAEDYEELVR 122
           RAVGV  DGT F +P  D LP+ +++  + + ++ V LA+PLR     E +  +     R
Sbjct: 64  RAVGVMPDGTTFRIPQEDHLPDALEVTDASLANQIVYLAVPLRSESLMEINWPEERGTGR 123

Query: 123 HRVLESEVPDSNTAGERTAMLQLGQLHTRLMRAGEATDAWTTLGIARVLERRVDNQVLLD 182
           +     EV D ++    T  + +  +  +LM   E   A+ ++ I R+LE+R D  V+LD
Sbjct: 124 YVSRRLEVRDVHSVQGDTTTIDVSPVRLQLMLEREDRSAYASIAIGRILEKRPDGSVVLD 183

Query: 183 RAMLPPLLDVAGHAVIRAWLDELLGLLRQRGEALAGRMTQGGTGGVAEIADFMLLQAVNR 242
              +P  L+V G + +  +++E+ GL+R+R + +A R++    GGVA+++DFMLLQA+NR
Sbjct: 184 PDFIPCHLNVVGISALHRFINEMSGLMRERAKNIAQRISSPAQGGVADVSDFMLLQALNR 243

Query: 243 NEAVFAHLAKSAMLHPRKFFEQALGLAGELASFRDSRRVARFGP-YIHDDLAMSFRPVMD 301
            +    HLA+   LHP + FE    + GELA+F D  R+    P Y HD  + SF+P++ 
Sbjct: 244 LQPQMKHLAELRSLHPERLFECLSCVCGELATFTDESRLPPSLPSYNHDSPSHSFQPLIR 303

Query: 302 DLRRSLSMVLEQSAIRIDLHDRKHGVRVAVVTDVELQRNATFVLAVNAHMPSEALRARFP 361
            LR+SLS+VLE  A+ I L  RK+G+ VA + D +L  +A F++AV A MP + LR  F 
Sbjct: 304 SLRQSLSVVLEPRAVSIQLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLDELRRLFT 363

Query: 362 TQVKIGPVERIRDLVNLALPGVTLTPMPVAPRQIPFHAGANYFELETRNSDLWRQLEQSG 421
            Q K+  VE+IR+L++L LPG+ LTP+PVAPRQ+P+HAG  Y++L+ + S  W  L  S 
Sbjct: 364 QQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYHAGYTYYQLD-KTSAAWAMLTHSS 422

Query: 422 GIAMHIAGDFPGLDLAFWAIRA 443
           G A H+A  F  L+L FWAIR+
Sbjct: 423 GFAFHVAAAFDDLELQFWAIRS 444