Pairwise Alignments

Query, 1200 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

Subject, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

 Score =  350 bits (897), Expect = e-100
 Identities = 305/1226 (24%), Positives = 525/1226 (42%), Gaps = 106/1226 (8%)

Query: 13   LLLTLLALIVVALLVWWIGPLVKIGALAPLESELTRAIVIGVIVLAVLLRALYRRWRARR 72
            LL T   L+ VA  +WW GP +++    PLES + R +   +  L  L  A++  W+ R+
Sbjct: 23   LLFTTFILLNVA--IWWAGPWLEVAGYKPLESIMARVVASSLFTLGCL--AVWGIWQWRK 78

Query: 73   ASRHLTDGLMKAPAARADAPVDGEQKILDTRFSEAVATLKQMRLHAAGKKPGWRDWLSIS 132
                 ++   K        P+   ++  +   ++ +  +KQ                S++
Sbjct: 79   LQAFKSE--QKREEQLRQDPIKVYEQRQEVELNQVMLNMKQ----------------SLN 120

Query: 133  GGSYLYDLPWYVFIGAPGAGKTTALVNSGLSFPLAEKFGPGAIRGVGGTRNCDWWFTDEA 192
              +YLY LPWY+ +G   AGKT+ +  SG +F  +        +      + DWW  DE+
Sbjct: 121  KHNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSEN-PYSFDWWIGDES 179

Query: 193  VLIDTAGRYTTQDSHQSEDKSA-----WEGFLGLLKKARPRRPLNGVFLTVSVADLLSQG 247
            VLID  G   TQ +   E+  A     W  F+  L + R RRPLNG+ L + VA L +  
Sbjct: 180  VLIDPDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATAT 239

Query: 248  PEARSQLAASIRARLLELDSKLTTRLPVYVLVTKSDLLYGFTDYFDDLGKEQRAQVFGFT 307
               R   A  +RARL EL   L+TRLPVY+ +TK DLL+GF  +F    K QR +V GFT
Sbjct: 240  ASERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFT 299

Query: 308  --LPAEENLQ--VEEKGLSTAFNREFALLHNRVNDGLIARMQRETDGTRRAAIFGFPAQF 363
              + + +NL   +EE      F  E+    +RVN  L   +        R AI+ F  Q 
Sbjct: 300  FSMDSVDNLDSWLEE------FASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQI 353

Query: 364  GSIGSLLSDLLEQVFTGSRFAQPPWVRGVYFTSGTQEGSPIDRVMGSLARSFGIERAMLA 423
              +  +L    ++     +F+    VRG YFTS  Q+G P +    + +R +G+  A+  
Sbjct: 354  SGLKEILQQFFQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINT 413

Query: 424  PQKSSGRS-YFLTSLLREVVFPEQRLAGADVKLERRRHTLRVIGVTAMTLVTVGLLAAWG 482
             Q++   + YF   L   +++PE  LA  + ++ + +  L  +   A ++ T+ L   W 
Sbjct: 414  AQRAKNSTVYFTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGLSFVACSVATLLLAGTWH 473

Query: 483  YSTLQNMNYLKSVEARVEPARQNLAALPARVQNLVEVAPVLQGLRDIWKTPENRA--GDE 540
             + L N+ +  +V  +V   ++         ++L     VL  L  I +         D+
Sbjct: 474  RNYLNNVQHADTVLTKVNQYKEQFPT----SRSLASQREVLDPLNKIREATLEFGFFRDK 529

Query: 541  PLSMT-LGLYQGDKLDAAAMLTHQRALNDAFLPQIAKRIEDQLRTAQKDNLEYTYEALKS 599
            P  ++  GLYQG  +      T+   L   FLP +       L  A+ D  E     L+ 
Sbjct: 530  PQYISDFGLYQGHTIGPKVEETYLNLLETRFLPLLMADTIVALNQAETD--EEKLAVLRV 587

Query: 600  YLMLYQPEHFDAEALKAWITLDWSRNL--DRGIPEDQRKQLEDQL-------DVLIAQGP 650
            Y ML        + +  +    W ++    R I E+    L+  +       + L     
Sbjct: 588  YRMLVDKSGRYQDYVMDYFAKYWQKSFSGQRQIQEELLGHLDYAMRHTDLTAERLNGDKG 647

Query: 651  PRSPLKMDENLVRSVRAVLASYPLEQRVFSRLKRQRATKDIPAFSVAAATGPSGPLVFER 710
                ++  + ++   +  L S P +QRV+  LK    T   P+ ++ +  GP   +VFE 
Sbjct: 648  AEQVMRPYDKVIARAQVELGSMPNDQRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEE 707

Query: 711  ISGKPLTEGVPGMFTYDGYHKRFQNEVTVLTGLLANEDPWVLGQDRNTADRLRDVAALGA 770
                  +  +P M T  G+   F  +   ++  LA  D WVLGQ +       D     A
Sbjct: 708  RVLNSSSLFIPQMLTKRGFDDYFMPQSESVSE-LALIDSWVLGQSKTAQFSEADKQ---A 763

Query: 771  LTDRVRRLYLEEYVKQWEALLSDVRLIRANGLDKNIETARILSGVGSPLSNFLRAVVKET 830
            L +++R LY+ +Y   W A L+++ +   N ++  +     ++    P+   LR +   T
Sbjct: 764  LREKIRDLYVADYTNTWRAALNEIDVKYFNDINDAVMVLENITSNLEPMQRLLRTLDDNT 823

Query: 831  TL---IPQGDAGKDVVSKATETVRNTRKGLEDLFGGDPGRQVPAGKRIESIVDDRFEPLR 887
             L   +P+ ++    + K+ +                         ++ S+++  F  L 
Sbjct: 824  QLYSALPKDESALKELLKSPK------------------------YKVASMIETPFADLN 859

Query: 888  RLVTAGGPNQPAPIDDALKLFNEVYVYLTAVD----------TAVKGRTSPPPGDVAGKL 937
             ++   G ++PA + + L   +E+  YL ++            A K R      D    L
Sbjct: 860  GMLKPVG-SKPAYMTEVLASVDELKSYLKSIQDAPDVGMAALDATKARVKLVNADPIYTL 918

Query: 938  KSDAGRLPEPVRSMVENLS-QSGAAQAQTAERGNLSQDLRPVAEFCARAIAGRYPFVGNS 996
            K  +  LP+P+ SM+  L+ +S     Q A +    +    V +     +AGRYPF   S
Sbjct: 919  KRISSGLPKPLDSMMAKLADESWYVVKQEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPAS 978

Query: 997  KRDVLPEDFGQMFGPGGLMDDFFQKRLAALVDTSTRPWRYKPVAERGAITTQALAQFERA 1056
             +DV   DF   F P G +D+F+ ++L   +D +         + +  I  + L Q ++A
Sbjct: 979  NKDVALADFEAFFAPNGTLDNFYNQQLKMFIDENISV--ASDDSAQSIIRKEVLDQIKQA 1036

Query: 1057 ARIKDIFFRGGGRGPSMRLDFKPVEMDAGITQFILDVDGQLVKYAHGPVVPMAVQWPGPK 1116
             +I++ FF   G    +    +P+ +     + +L+VDGQ + Y+HGP   + + WP   
Sbjct: 1037 QKIREAFFNRKGI-LDVSFSVEPLSLSNNKRRSVLNVDGQFLAYSHGPRENVELIWPNTL 1095

Query: 1117 GSNQVRIQVSPPSTTGSSGEA--VDGPWALFRALDDGQLEAGDAPEKFFITFQIGARKTR 1174
              + V      P+ T  S  +  + GPWA FR LD G + +       F  F +   +  
Sbjct: 1096 RDSAVSKVTLIPTQTNMSPRSLQIQGPWAFFRLLDQGDVVSASQTSVDF-KFIVDGGEMI 1154

Query: 1175 FEVTTNSVQHPIRLRELREFSCPEGL 1200
            + +   +  +P   R  + F   + L
Sbjct: 1155 YRINAEADANPFTERLFKSFKLSKTL 1180