Pairwise Alignments

Query, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 251 a.a., Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) from Pseudomonas fluorescens FW300-N2E2

 Score = 97.4 bits (241), Expect = 2e-25
 Identities = 76/251 (30%), Positives = 130/251 (51%), Gaps = 18/251 (7%)

Query: 5   RLLLASLLLTQVIFTASARPFPDIQASGKLVVATGGEFPPFNYFEGK-KLTGFEIEIAEI 63
           + LLA+ +   ++F+ SA       A  KL +     +PPFN  +   ++ GF+ +I + 
Sbjct: 6   KFLLAAAV--SLVFSTSA------MAVEKLKMGIEAAYPPFNNKDASGQVVGFDKDIGDA 57

Query: 64  VVKKMGLAIEWKTIGFDSLLAGLQQDRWDIVVSSHGITPERAKAVDFASPHYCSGSSIVS 123
           +  KM +  E  T  +D ++  L   ++D ++SS  +  ER +AVDF  P+Y +    ++
Sbjct: 58  LCAKMKVECEVVTSNWDGIIPALMAKKFDFLISSLSVNDERKQAVDFTDPYYSNKLQFIA 117

Query: 124 -RDPAIR-GAADLTGKVVGVQTGS---TYLENVRKLTKPKEIKNFPQDRDVRTALATGRV 178
            ++   +     L GKV+G Q  +   T+LE+  +L      K +    +    L +GRV
Sbjct: 118 PKNVDFKVDKESLKGKVIGAQRSTLAGTWLED--ELGSDITAKLYDTQENAYLDLTSGRV 175

Query: 179 DAWVTDKFVALAAVKSNP-QANLKLGDPLFV-ERIAAAVGKGNTALAAAYDKALAEALAD 236
           DA + DK+V    +K+   +A    GDP+   ++IA AV KGN  L    + AL E LAD
Sbjct: 176 DAILADKYVNYDWLKTEAGRAYEFKGDPVVEGDKIAIAVRKGNDELRNKLNAALKEILAD 235

Query: 237 GSYAAVSNRYF 247
           G+Y  ++++YF
Sbjct: 236 GTYKKINDKYF 246