Pairwise Alignments

Query, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 248 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 97.4 bits (241), Expect = 2e-25
 Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 4/241 (1%)

Query: 16  VIFTASARPFPDIQASGKLVVATGGEFPPFNYFEGKKLTGFEIEIAEIVVKKMGLAIEWK 75
           +   A A     +QA+ ++ V   G + PF + +  +L GFE+++   + K+    +E+ 
Sbjct: 7   IALAALALSSATVQAATEVKVGMSGRYFPFTFVKQDELQGFEVDVWNEIGKRNDYKVEFV 66

Query: 76  TIGFDSLLAGLQQDRWDIVVSSHGITPERAKAVDFASPHYCSGSSIVSR--DPAIRGAAD 133
           T  F  LL  L+  R D + +   IT  R     F+ P+   G+ I  R  + AI+G  D
Sbjct: 67  TANFSGLLGLLETGRIDTISNQITITDARKAKYLFSDPYVIDGAQITVRKGNEAIKGIDD 126

Query: 134 LTGKVVGVQTGSTYLENVRKLTKPKEIKNFPQDRDVRTALATGRVDAWVTDKFVALAAVK 193
           L GK V V  GS + + +R   K  +I     D  +   +A GR DA+V D+  AL  ++
Sbjct: 127 LAGKTVAVNLGSNFEQLLRNHDKDGKINIKTYDTGIEHDVALGRADAFVMDRLSALELIE 186

Query: 194 SNPQANLKLGDPL-FVERIAAAV-GKGNTALAAAYDKALAEALADGSYAAVSNRYFGEDV 251
                    G P   +E     V  +    L    +KALA   ADG+ + ++ ++FG D+
Sbjct: 187 KTGLPLQLAGSPFETIENAWPFVNNEKGQQLQGEVNKALAAMRADGTLSQIALKWFGTDI 246

Query: 252 S 252
           S
Sbjct: 247 S 247