Pairwise Alignments

Query, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 258 a.a., amino acid uptake ABC transporter substrate-binding protein precursor from Sinorhizobium meliloti 1021

 Score =  106 bits (264), Expect = 5e-28
 Identities = 76/259 (29%), Positives = 130/259 (50%), Gaps = 18/259 (6%)

Query: 5   RLLLASLLLTQVIFTASARPFPDIQASGKLVVATGGEFPPFNYFEGK-KLTGFEIEIAEI 63
           R L+ +L L     ++SA       A+ KL + T G +PPFN+ +   K+ GF++EI   
Sbjct: 2   RKLILALALAGTALSSSA------VAAEKLKIGTEGAYPPFNFVDSSGKIGGFDVEIGLA 55

Query: 64  VVKKMGLAIEWKTIGFDSLLAGLQQDRWDIVVSSHGITPERAKAVDFASPHYCSGSSIVS 123
           + ++M +  E     +D ++ GL   ++D++++S  IT ER K V F +P+Y +  +  +
Sbjct: 56  LCERMKVECEVVAQDWDGIIPGLLAKKYDMIIASMFITEERKKQVAFTNPYYLAAMTHAA 115

Query: 124 RDPAIRGAAD---LTGKVVGVQTGSTYLENVRKLTKPKEIKNFPQDRDVRTALATGRVDA 180
              A   A     L GKV+G Q+G+T  + +  +    EIK +P   +    +  GR+D 
Sbjct: 116 PKGAGISAFSNEALQGKVIGAQSGTTQADYIAAVYPDAEIKLYPTQDEANLDMVNGRLDL 175

Query: 181 WVTDKFVALAAVKSNPQAN---LKLGDPL----FV-ERIAAAVGKGNTALAAAYDKALAE 232
            V D    L  V  N         +G+P+    FV + +  AV + +  +    +KAL E
Sbjct: 176 QVGDMLPLLDWVTKNDDGKGCCELVGEPITDKKFVGDGVGIAVRQEDNEMREKLNKALDE 235

Query: 233 ALADGSYAAVSNRYFGEDV 251
             ADG+Y  ++++YF  DV
Sbjct: 236 IRADGTYKKINDKYFTIDV 254