Pairwise Alignments

Query, 881 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Variovorax sp. SCN45

Subject, 754 a.a., Topoisomerase IV subunit A (EC 5.99.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  344 bits (883), Expect = 1e-98
 Identities = 229/632 (36%), Positives = 351/632 (55%), Gaps = 80/632 (12%)

Query: 12  SLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVG 71
           SL +   ++YL+Y+M VI+ RALP   DGLKPV RR+++AM EL  D +  +KKSAR VG
Sbjct: 16  SLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKKSARTVG 75

Query: 72  DVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNA-AAMRYTEIRLAKI 130
           DV+GK+HPHGD + Y+ +V +AQ FS R+ LVDGQGN+G+ D   + AAMRYTE RL++ 
Sbjct: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135

Query: 131 AHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPHNLNEV 190
           +  +L+++ + T D+  N+DG+  EP VLP++LPN+L+NG+ GIAVGMAT++PPHNL EV
Sbjct: 136 SEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPPHNLREV 195

Query: 191 VDACLYLLRNPEASIDELMEIVPAPDFPT-AGIIYGINGVKDGYRTGRGKVVMRAKCHFE 249
             AC+ LL  P+A++++L E +  PD+PT A II     +   Y TGRG V MRA  H E
Sbjct: 196 ATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRTDLLKIYETGRGSVRMRAVYHVE 255

Query: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEK--KIEGISHIQDESD-KSGMRLVIE 306
           D D      IIV  LP+QV+   + E++A ++  K  K   ++ ++DESD ++  R+VI 
Sbjct: 256 DGD------IIVTALPHQVSGAKVLEQIAAMMQAKPSKAPQVADLRDESDHENPCRIVII 309

Query: 307 LKRGEVP-EVVLNNLYKQTQLQDTFGINM-VALVDGQPKLCNLKDLIQVFLQHRREVVTR 364
                V  + ++ +L+  T L+ ++ +N+ +  +DG+P+L NL+ L+  +L+ R + V R
Sbjct: 310 PVNSRVDHDALMQHLFASTDLESSYRVNINIIGLDGKPQLKNLRALLVEWLEFRVKTVRR 369

Query: 365 RTVFNLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREML 424
           R  F L K   R H+L+GL +A  N+DE I IIR    P   KA L+ R           
Sbjct: 370 RLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHP---KASLIER----------- 415

Query: 425 TRSRADGGVINADDYRPEGLEREYGMGGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVA 484
                                          + LS+ QA  IL  RL++L  LE+ K+ A
Sbjct: 416 -------------------------------FALSEIQADYILDTRLRQLARLEEMKLRA 444

Query: 485 EYKDVMAEIDDLLDILAKPERVSTIIGEELGTIKQEFGQSKIGARRSLVEHS-AYDLSTE 543
           E  +++ E   L  +L    ++  ++  EL    + +G  +   R  +VE + A  LS  
Sbjct: 445 EQDELLKEQAKLQALLGSEAKLKKLVRTELLKDAETYGDDR---RSPIVERAEAKALSEH 501

Query: 544 DLITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATAT----KDDDWIDQLFIANTH 599
           DL+    + V LS  G+++S             +G    AT    K  D    L    ++
Sbjct: 502 DLLPNEKVTVVLSEKGWVRS------------AKGHDIDATGLSYKAGDGFKALAAGRSN 549

Query: 600 DYILCFSNRGRLYWLKVWEVPAGSRGSRGRPI 631
            + +   + GR Y +    +P+ +RG +G P+
Sbjct: 550 QFAVFVDSTGRSYSVPAHTLPS-ARG-QGEPL 579