Pairwise Alignments

Query, 881 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Variovorax sp. SCN45

Subject, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

 Score =  358 bits (918), Expect = e-103
 Identities = 265/824 (32%), Positives = 425/824 (51%), Gaps = 92/824 (11%)

Query: 7   ETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKS 66
           E LP  L +    +YL+Y+M VI+ RALP   DGLKPV RR+++AM EL    +  YKKS
Sbjct: 11  EQLP--LRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 67  ARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNA-AAMRYTEI 125
           AR VGDV+GKYHPHGD + Y+ +V +AQ FS R+ LVDGQGN+G+ D   + AAMRYTE 
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEA 128

Query: 126 RLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPH 185
           +L+K A  +L+++ + TVD+Q N+DG+ +EPK+LP++LP++L+NG  GIAVGMAT+IPPH
Sbjct: 129 KLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPH 188

Query: 186 NLNEVVDACLYLLRNPEASIDELMEIVPAPDFPT-AGIIYGINGVKDGYRTGRGKVVMRA 244
           N+ EV DA ++L+ NP A + +LM+ V  PDFPT A II     ++  YR+GRG + MRA
Sbjct: 189 NVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRA 248

Query: 245 KCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESD-KSGMRL 303
               E  D      I++  LP+QV+   L E++A  +  KK+  +  ++DESD ++  R+
Sbjct: 249 VWCKEGSD------IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 304 VIELKRGEVP-EVVLNNLYKQTQLQDTFGINMVAL-VDGQPKLCNLKDLIQVFLQHRREV 361
           VI  +   V  ++++N+L+  T L+ +F +N+  + +D +P++  L  ++  ++  RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 362 VTRRTVFNLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVR 421
           V  R  + L K   R H+L+GL +A  N+DE I IIR    P   KA LM R        
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR-------- 411

Query: 422 EMLTRSRADGGVINADDYRPEGLEREYGMGGDGLYRLSDTQAQEILQMRLQRLTGLEQDK 481
                                             + L+D QA  IL  +L+ L  LE+ K
Sbjct: 412 ----------------------------------FDLTDIQADAILDTKLRHLAKLEEMK 437

Query: 482 IVAEYKDVMAEIDDLLDILAKPERVSTIIGEELGTIKQEFGQSKIGARRSLVE-HSAYDL 540
           I  E  ++  E   L ++L    R++ ++ +E+     +FG  +   R  LVE   A  L
Sbjct: 438 IRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDR---RSPLVEREEAKAL 494

Query: 541 STEDLITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKDDDWIDQLFIANTHD 600
           +  DL+    + V LS  G+I+     +   Q    +         D+++       ++ 
Sbjct: 495 TERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKA-------GDNYLTHA-CGKSNQ 546

Query: 601 YILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQ 660
             +   + GR Y L+   +P+ +RG +G PI     + EG  I     + GE+     DQ
Sbjct: 547 QAVFLGSDGRSYSLESHTLPS-ARG-QGEPITGRLNVAEGTTIR--QVVMGEE-----DQ 597

Query: 661 YVFMATSMGTVKKTALDEFNNPRKGGIIAVNLDE-GDYLIGAALTDGKHD-VMLFSDGGK 718
              + +  G       D+  +  + G   +NL E  + +    + D  +D ++  ++ G+
Sbjct: 598 LWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGR 657

Query: 719 AVRFDEEDVRPL----GRNARGVRGMSLEAGQGVIAMLVAEDEQQSV-LTATENGYGKRT 773
            + F  +D+  L    G     +     +  + V++ L+   +  S+ L A +   G + 
Sbjct: 658 MLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKV 717

Query: 774 SITEYTRHGRGTKGMIAIQQSERNGKVVAATLV------HSDDE 811
           S  +  R  RG +G +  +  +R   +   T        HS+DE
Sbjct: 718 SDLDNFRGERGRRGALLPRGLQRVTAIEIETSAEPESTPHSEDE 761