Pairwise Alignments
Query, 881 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Variovorax sp. SCN45
Subject, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056
Score = 991 bits (2562), Expect = 0.0
Identities = 513/883 (58%), Positives = 647/883 (73%), Gaps = 43/883 (4%)
Query: 1 MTSFAKETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWN 60
M+ AKE P+++E+E+RSSYLDYAMSVIVGRALPD RDGLKPVHRRVLFAM+ L NDWN
Sbjct: 1 MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
Query: 61 RPYKKSARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAM 120
+ YKKSAR+VGDVIGKYHPHGD +VYDTIVR+AQ FS+R+MLVDGQGNFGS+DGD+AAAM
Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
Query: 121 RYTEIRLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMAT 180
RYTE+R++KIAHE+LAD+DKETVD+ NYDG+E+ P VLP+++PNLL+NG+ GIAVGMAT
Sbjct: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
Query: 181 NIPPHNLNEVVDACLYLLRNPEASIDELMEIVPAPDFPTAGIIYGINGVKDGYRTGRGKV 240
NIPPHNL EV+D CL + N +IDELM+ +P PDFPTA +I G G+ D Y+TGRGKV
Sbjct: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
Query: 241 VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300
MR+K E D+ ++ IIV E+PYQVNK L E++AELV EKK+EGIS ++DESDK G
Sbjct: 241 YMRSKAEIE-TDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
Query: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPKLCNLKDLIQVFLQHRRE 360
MR+VIE KR V EVVLNNLY TQLQ TFGINMVAL +GQPKL NLK++++ F+ HRRE
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 361 VVTRRTVFNLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLV 420
VVTRRT+F LRKARER H+LEGLA+ALANIDE I +IR + TP AK L+ R WD V
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 419
Query: 421 REMLTRSRADGGVINADDYRPEGLEREYGMGGDGLYRLSDTQAQEILQMRLQRLTGLEQD 480
ML R+ D RPE LE +YG+ DG Y L++ QAQ IL +RL +LTGLE +
Sbjct: 420 AAMLERAGTDAA-------RPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHE 471
Query: 481 KIVAEYKDVMAEIDDLLDILAKPERVSTIIGEELGTIKQEFGQSKIGARRSLVEHSAYDL 540
KI+ EYK ++ EI L+ ILA ER+ +I EEL I+ F ARR+ + + +D+
Sbjct: 472 KILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSD----ARRTEITAATHDI 527
Query: 541 STEDLITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKDDDWIDQLFIANTHD 600
E+LI D+VVTLSH GY+K Q L +Y AQ+RGG+GK AT K++D+I++L +ANTHD
Sbjct: 528 DMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHD 587
Query: 601 YILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQ 660
IL FS RG+ Y +KV+++P SR +RG+PIVN+ PL+E E+I L +T F D+
Sbjct: 588 NILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVT----EFSEDK 643
Query: 661 YVFMATSMGTVKKTALDEFNNPRKGGIIAVNLDEGDYLIGAALTDGKHDVMLFSDGGKAV 720
++FMAT GTVKKT+LD+F N R G+IA+NL + D LIG +TDG+ ++MLFS GK V
Sbjct: 644 FIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVV 703
Query: 721 RFDEED-------------------------VRPLGRNARGVRGMSLEAGQGVIAMLVAE 755
RF E + VRP+GR A GVRGM L G V++++V +
Sbjct: 704 RFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPK 763
Query: 756 DEQQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHSDDEIMLI 815
E VLT TENGYGKRTS++EY GRGT+G+++I+ SERNG VV A V DE M+I
Sbjct: 764 TE-GDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMI 822
Query: 816 TDKGVLVRTRVAEIRELGRATQGVTLIGLDEGAKLSGLQRIVE 858
T+ G LVRTRVAE+ ++GR TQGVTLI EG + GLQRI E
Sbjct: 823 TNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRIDE 865
Score = 42.7 bits (99), Expect = 1e-07
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 662 VFMATSMGTVKKTALDEFNNPRKG--GIIAVNLDEGD-YLIGAALTDGKHDVMLFSDGGK 718
V T G K+T+L E+ +G G++++ + E + ++GA + M+ ++ G
Sbjct: 768 VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGT 827
Query: 719 AVRFDEEDVRPLGRNARGVRGMSLEAGQGVIAMLVAEDEQQSVLTATE 766
VR +V +GRN +GV + G+ V+ + ++ ++S L E
Sbjct: 828 LVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGE 875