Pairwise Alignments

Query, 881 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Variovorax sp. SCN45

Subject, 769 a.a., DNA topoisomerase IV subunit A from Marinobacter adhaerens HP15

 Score =  363 bits (933), Expect = e-104
 Identities = 267/793 (33%), Positives = 409/793 (51%), Gaps = 89/793 (11%)

Query: 11  ISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70
           +SL +    +YLDY+M VI+ RALP+  DGLKPV RR+++AM EL       YKKSAR V
Sbjct: 14  VSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLKSTSKYKKSARTV 73

Query: 71  GDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNA-AAMRYTEIRLAK 129
           GDV+GK+HPHGD + Y+ +V +AQ FS R+ LVDGQGN+GS D   + AAMRYTE RLA 
Sbjct: 74  GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRYTESRLAP 133

Query: 130 IAHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPHNLNE 189
            A  +L ++ + TVD+  N+DG+  EP VLP++LP++L+NG+ GIAVGMAT+IPPHN+ E
Sbjct: 134 FAEVLLGELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMATDIPPHNVRE 193

Query: 190 VVDACLYLLRNPEASIDELMEIVPAPDFPT-AGIIYGINGVKDGYRTGRGKVVMRAKCHF 248
           V  AC+ LL  PE+++DEL E +  PDFPT A II     ++  Y TGRG + MRA+   
Sbjct: 194 VTAACIRLLDQPESTVDELCEHIKGPDFPTQAEIITPRKDIRQMYETGRGSLRMRARWIR 253

Query: 249 EDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESD-KSGMRLVIEL 307
           E  +      I+V +LP+QV+   + E++A  +  KK+  ++ ++DESD ++  RLVI  
Sbjct: 254 ESGE------IVVTDLPHQVSGNRVLEQIAHQMQTKKLPMVADLRDESDHENPTRLVIVP 307

Query: 308 KRGEVP-EVVLNNLYKQTQLQDTFGINM-VALVDGQPKLCNLKDLIQVFLQHRREVVTRR 365
           +   V  + ++ +L+  T L+ T+ +N+ V   DG+P +  L  ++  +L  RR  V RR
Sbjct: 308 RSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLHQILTEWLTFRRTTVIRR 367

Query: 366 TVFNLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLT 425
               L K   R H+LEGL +A  NIDE I IIR    P   KAELM R            
Sbjct: 368 LQHRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKP---KAELMAR------------ 412

Query: 426 RSRADGGVINADDYRPEGLEREYGMGGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAE 485
                                         + LS  QA+ IL+++L+ L  LE+ KI  E
Sbjct: 413 ------------------------------FGLSADQAEAILELKLRHLAKLEEMKIRGE 442

Query: 486 YKDVMAEIDDLLDILAKPERVSTIIGEELGTIKQEFGQSKIGARRSLVE-HSAYDLSTED 544
             ++ AE D+L  IL   +R+  +I  E+    + FG  +   R  +VE   A   S  D
Sbjct: 443 QDELAAERDELQSILGSEDRLRELIKSEMQADAETFGDDR---RSPIVEREEAKAFSEVD 499

Query: 545 LITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKDDDWIDQLFIANTHDYILC 604
           LI+   + V LS  G++        RA K      +  + K  D          +   + 
Sbjct: 500 LISNDPVTVVLSEKGWV--------RAAKGHDIEPEGLSYKAGDRFSLAARGRNNQQTIF 551

Query: 605 FSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQYVFM 664
             + GR Y L     P+ +RG +G P+        G   +  L     ++         +
Sbjct: 552 LDSTGRAYSLMAHSFPS-ARG-QGEPLTGRINPPSGASFSGLLMGDPSRK-------ALL 602

Query: 665 ATSMGTVKKTALDEFNNPRKGGIIAVNLDEGDYLIGAALTDGKHDVMLF----SDGGKAV 720
            T  G    T+L++  +  + G   V++ +G  ++   LT    +  L+    S+ G+ +
Sbjct: 603 VTDGGYGFVTSLNDMISKNRNGKAVVSVPKGARIM-PPLTIPTTEKTLYLGAVSNEGRML 661

Query: 721 RFDEEDVRPLGRNARGVRGMSLEAG------QGVIAMLVAEDEQQSVLTATENGYGKRTS 774
            F   ++  L +  +G + +S+ +       + V+A+ V  ++ Q  + A +   G + S
Sbjct: 662 VFPLSELPELAK-GKGNKIISIPSARVQSREEYVVAVAVFAEDDQLEIRAGKRKMGLQFS 720

Query: 775 ITEYTRHGRGTKG 787
             E+    RG +G
Sbjct: 721 DLEHYLGERGRRG 733



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 16/83 (19%), Positives = 38/83 (45%)

Query: 752 LVAEDEQQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHSDDE 811
           L+  D  +  L  T+ GYG  TS+ +     R  K ++++ +  R    +          
Sbjct: 591 LLMGDPSRKALLVTDGGYGFVTSLNDMISKNRNGKAVVSVPKGARIMPPLTIPTTEKTLY 650

Query: 812 IMLITDKGVLVRTRVAEIRELGR 834
           +  ++++G ++   ++E+ EL +
Sbjct: 651 LGAVSNEGRMLVFPLSELPELAK 673