Pairwise Alignments

Query, 288 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 314 a.a., Alkanesulfonates transport system permease protein from Pseudomonas fluorescens FW300-N2E2

 Score = 95.9 bits (237), Expect = 1e-24
 Identities = 72/249 (28%), Positives = 124/249 (49%), Gaps = 10/249 (4%)

Query: 39  PEW-HRWAIVVAV-----HIAGIALWELVVRVFAIQPFILPAPSKVLATLFNPNYSWL-- 90
           P+W  RW    A+      I  + LWEL  R   I   ++ APS++  TL+    S    
Sbjct: 55  PDWLRRWRTPEALLRLISPIVLLLLWELASRWGLIPQRVIAAPSQIGGTLWAMIVSGELG 114

Query: 91  KNTGVTAVEVFGGYALGLVLGILCALLF-ITSRRLMLLAFPLLVTLNMIPKVAMGPLVIV 149
           ++  V+      G ++G+ +G+  AL+  +T R  ++L  P+ + L  IP +A+ PL I+
Sbjct: 115 RHLLVSLQRALVGLSIGVTIGVFAALISGLTKRGEVVLDSPMQM-LRTIPSLALVPLFIL 173

Query: 150 WFSYGIGPNILITFSLCFFPILLTTIRGLNETEPELLDLVRALKGSRWQLFRYIQLPGSL 209
           WF  G    I +      FP+ L    G+   +P+L++    L  SR +L  ++ LPGSL
Sbjct: 174 WFGIGEFTKIALIVIGTTFPVYLNLFAGIRNIDPKLIEAANTLGLSRRELIWHVILPGSL 233

Query: 210 PYVFSGMKVATILAVAGAVVGEFIASERGLGYLMIQVQASLDTPAVFMAVLLITGLGVLL 269
              F G++ +  ++    V  E I +  G+GYL    +  + T  + + +L+ + LG+L+
Sbjct: 234 TSFFVGLRYSLGISWLALVFVEQINTTAGIGYLASDARDFMRTDVIVICLLIYSVLGLLI 293

Query: 270 YLLVLLLER 278
             L+  LER
Sbjct: 294 DGLIRTLER 302