Pairwise Alignments

Query, 288 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 281 a.a., aliphatic sulfonate ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  105 bits (261), Expect = 1e-27
 Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 44  WAIVVAVHIAGIALWELVVRVFAIQPFILPAPSKVLATLFN--PNYSWLKNTGVTAVEVF 101
           W     + IA +ALW+       I P + P+   +L+ L+      + L +  ++     
Sbjct: 35  WLSRYGLLIAFLALWQAASTAGWINPAVFPSVGAILSALWTGISGGALLDDIAISLQRSG 94

Query: 102 GGYALGLVLGILCALLFITSRRLMLLAFPLLVTLNMIPKVAMGPLVIVWFSYGIGPNILI 161
             +   +VL I   LL    R +     P+L        +A+ P+ I+    G    + +
Sbjct: 95  TAFVGAVVLAIPLGLLMGQVRAIENALDPVLQLFRQTSALALYPVFILLLGLGEASKVFV 154

Query: 162 TFSLCFFPILLTTIRGLNETEPELLDLVRALKGSRWQLFRYIQLPGSLPYVFSGMKVATI 221
            F    FP+LL+TI G+ E + +L+++ R    SR  +FR + LPG++P +F G++++  
Sbjct: 155 IFWATLFPLLLSTISGVKEVDSKLIEMARVYGASRLTVFRRVVLPGAVPSIFVGLRLSAT 214

Query: 222 LAVAGAVVGEFIASERGLGYLMIQVQASLDTPAVFMAVLLITGLGVLL-YLLVLLLERLF 280
            A+   +  E I + +G+G+ ++  Q +   P +F A+ ++ GLG++  Y LV    RL 
Sbjct: 215 TALLLLIASEMIGANKGIGFQVMNAQYNFQIPLMFAAIFILAGLGLVSNYALVFAQRRLC 274

Query: 281 ITQDA 285
              DA
Sbjct: 275 RWSDA 279