Pairwise Alignments

Query, 612 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6 from Variovorax sp. SCN45

Subject, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  127 bits (318), Expect = 1e-33
 Identities = 132/531 (24%), Positives = 230/531 (43%), Gaps = 98/531 (18%)

Query: 11  IMFAGLICFLLLGYPVAFSLGACGLFFGLVGIELGVFQSSVMAWLPQRLIGIMAND-TLL 69
           ++F  +I  +++G P+A SLG   + F L          + +A + Q L    A   TLL
Sbjct: 5   LLFILVIGMMIVGVPIAISLGLSSILFLLW------HSDASLASVAQTLFNAFAGHYTLL 58

Query: 70  AVPFFTLMGLILERSGMAEDLLDTVGQVFGPMRGGLALAVIFVGALLAATTGVVAASVIS 129
           A+PFF L    +   G+A+ ++     + G  RGGLA+A +    + AA +G   A+V++
Sbjct: 59  AIPFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVA 118

Query: 130 MGLISLPIMLRYGYDRRLSSGVIAASGTLAQIIPPSLVLIIMADQLGKSVGDMYKGAFLP 189
           +G I +  M++ GY +  ++GVI  +GTL  +IPPS+V+++ +     SVG M+ G  +P
Sbjct: 119 IGSIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVP 178

Query: 190 GFMLMGLYVVYVVFLAIFRPAQVPALP-------PEARTFREPNGSGGYTSLVALAAL-S 241
           G +L GL ++    +AI+  A++  LP        EA    +    G    ++ L  +  
Sbjct: 179 G-LLAGLMLI----IAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYG 233

Query: 242 AVVAVWLARNMAAVHTWFQGQEV------TSVATDEKVVVAMCGGVFVALVIALINKGLK 295
            +     A  +AAV+++F    +       +  T+ K V+       V +V   ++K  K
Sbjct: 234 GIFTPTEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVL-------VKVVETFVHKDTK 286

Query: 296 LNLLSRLAERVTFVLIPPLLLIFLVLGTIFLGVATPTEGGAMGALGALIMAWVRRRMSLA 355
             L    A ++T      ++L+F++   + L      E              + + ++ +
Sbjct: 287 ATLYD--AGKLT------IMLMFIIANALILKHVLTEER-------------IPQMITES 325

Query: 356 LLKQALASTTKLSSFVMFILIGATVFSLVFQAADGPIWVEHLLSSLPGGPVGFLIAVNVL 415
           +L   L   T L    + +L+G                           P G L+ V  L
Sbjct: 326 MLSAGLGPITFLIVVNLILLVGGQFME----------------------PSGLLVIVAPL 363

Query: 416 VFFLAFFLDYFELSFIVVPLLAPVAHKLGIDLIWFGVLLAVNMQTSFMHPPFGFALFFLR 475
           VF                    P+A  LGID I  G+++ VNM+   + PP G  LF   
Sbjct: 364 VF--------------------PIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTS 403

Query: 476 SVAPDKQYVDRVTQKVMEPVTTMQIYRGAVPFVLIQLTMVGVLIAFPQIVT 526
            VA  K  +  V +  +  V  M ++   V +V    T +  L+  P+I+T
Sbjct: 404 GVA--KMSMMNVVKAALPWVGVMFLFLIIVTYVPWVSTWLPTLLMGPEIIT 452