Pairwise Alignments

Query, 612 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6 from Variovorax sp. SCN45

Subject, 426 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  100 bits (250), Expect = 1e-25
 Identities = 108/452 (23%), Positives = 198/452 (43%), Gaps = 59/452 (13%)

Query: 94  VGQVFGPMRGG--LALAVIFVGALLAATTGVVAASVISMGLI----SLPIMLRYGYDRRL 147
           +G + GPM  G  +A A+I  G  L    G+  A +++  ++    S P+M    +   L
Sbjct: 7   LGALLGPMALGVPIAFALILSGVALMLYLGLFDAQIVAQNVLNGADSFPLMAVPFF---L 63

Query: 148 SSGVIAASGTLAQIIPPSLVLIIMADQLGKSVGDMYKGAFLPGFMLMGLYVVYVVFLAIF 207
            +G +  +G L++ I    V + MA  +G   G +   A     +L  L    V   A  
Sbjct: 64  LAGEVMNTGGLSRRI----VALAMA-MVGHIRGGLGFVAIFAACILSSLSGSAVADAAAL 118

Query: 208 RPAQVPALPPEARTFREPNGSGGYTSLVALAALSAVVAVWLARNMAAVHTWFQGQEVTSV 267
               +P +    ++  +P  + G      L A ++++   +  ++  +        +  V
Sbjct: 119 GALLLPMM---LKSGHDPARASG------LIASASIIGPIIPPSIGFI--------LFGV 161

Query: 268 ATDEKVVVAMCGGVFVALVIA--------LINKGLKLNLLSRLAERVTF-VLIPPLLLIF 318
                +      G+F  L+IA        ++ +  +  L  R + R+     +  L  +F
Sbjct: 162 VGGVSITKLFLAGIFPGLMIAAALSITWLIVARKEQFELPPRQSGRLRLRAFVDSLWALF 221

Query: 319 L---VLGTIFLGVATPTEGGAMGALGALIMAWV-RRRMSLALLKQALASTTKLSSFVMFI 374
           L   ++  +  GV TPTE G + A+ +L ++ V  R ++ A L     S  K+S+ VMF+
Sbjct: 222 LPVIIIAGLKFGVFTPTEAGVIAAVYSLFVSMVVYRELAPAQLFHVFVSAAKISAVVMFL 281

Query: 375 LIGATVFSLVFQAADGPIWVEHLLSSLPGGPVGFLIAVNVLVFFLAFFLDYFELSFIVVP 434
           +  A V + +   AD P  +  LL  L G     LIA+ VL+  +   +D      I+ P
Sbjct: 282 VACAAVSAWLITVADVPGALAALLEPLMGNQTALLIAIMVLIVIVGTAMDMTPTILIMTP 341

Query: 435 LLAPVAHKLGIDLIWFGVLLAVNMQTSFMHPPFGFALFFLRSVAPDKQYVDRVTQKVMEP 494
           +L PV  + GID ++FGVL  +N     + PP G  L  +  V+                
Sbjct: 342 VLMPVIKQAGIDPVYFGVLFIINNSIGLITPPVGTVLNVICGVS---------------K 386

Query: 495 VTTMQIYRGAVPFVLIQLTMVGVLIAFPQIVT 526
           ++   + +G +PF+  +L ++ +L+ FP++VT
Sbjct: 387 LSMEDLMKGVMPFLFAELIVLFLLVLFPELVT 418



 Score = 99.8 bits (247), Expect = 2e-25
 Identities = 62/207 (29%), Positives = 108/207 (52%), Gaps = 9/207 (4%)

Query: 11  IMFAGLICFLLLGYPVAFSLGACGLFFGLVGIELGVFQSSVMAWLPQRLIGIMANDTLLA 70
           I    L+  + LG P+AF+L   G+   L    LG+F + ++A   Q ++    +  L+A
Sbjct: 5   IFLGALLGPMALGVPIAFALILSGVALMLY---LGLFDAQIVA---QNVLNGADSFPLMA 58

Query: 71  VPFFTLMGLILERSGMAEDLLDTVGQVFGPMRGGLALAVIFVGALLAATTGVVAASVISM 130
           VPFF L G ++   G++  ++     + G +RGGL    IF   +L++ +G   A   ++
Sbjct: 59  VPFFLLAGEVMNTGGLSRRIVALAMAMVGHIRGGLGFVAIFAACILSSLSGSAVADAAAL 118

Query: 131 GLISLPIMLRYGYDRRLSSGVIAASGTLAQIIPPSLVLIIMADQLGKSVGDMYKGAFLPG 190
           G + LP+ML+ G+D   +SG+IA++  +  IIPPS+  I+     G S+  ++     PG
Sbjct: 119 GALLLPMMLKSGHDPARASGLIASASIIGPIIPPSIGFILFGVVGGVSITKLFLAGIFPG 178

Query: 191 FMLMGLYVVYVVFLAIFRPAQVPALPP 217
            M+     + + +L + R  Q   LPP
Sbjct: 179 LMIAA--ALSITWLIVARKEQF-ELPP 202



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 89  DLLDTVGQVFGPMRGGLA--LAVIFVGALLAATTGVVAASVISMGLISLPIMLRYGYDRR 146
           D+   +  +  P+ G     L  I V  ++  T   +  +++ M  + +P++ + G D  
Sbjct: 296 DVPGALAALLEPLMGNQTALLIAIMVLIVIVGTAMDMTPTILIMTPVLMPVIKQAGIDPV 355

Query: 147 LSSGVIAASGTLAQIIPP-SLVLIIMADQLGKSVGDMYKGAFLPGFMLMGLYVVYVVFL 204
               +   + ++  I PP   VL ++      S+ D+ KG     F+   L V++++ L
Sbjct: 356 YFGVLFIINNSIGLITPPVGTVLNVICGVSKLSMEDLMKGVM--PFLFAELIVLFLLVL 412