Pairwise Alignments

Query, 360 a.a., TRAP transporter solute receptor, unknown substrate 6 from Variovorax sp. SCN45

Subject, 367 a.a., TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component from Pseudomonas stutzeri RCH2

 Score =  221 bits (564), Expect = 2e-62
 Identities = 127/349 (36%), Positives = 187/349 (53%), Gaps = 15/349 (4%)

Query: 1   MDRRSLIKNAGI---AGVLA----------AGIAPAVHAQTAVRWRLASSFPRSLDTIFG 47
           M RR ++  AG+   A  LA          AG +     QT   W++ +S+P++   +  
Sbjct: 1   MKRRDILTAAGVGLAATALAGCNDKSDKPVAGESKQAEQQT-FNWKMVTSWPKNFPGVGV 59

Query: 48  SAEMLSKTVKALSGGKFEISVHPAGELMPAFGVVDALQGDTLEMAQTAAYYFTGKDPIFA 107
            AE  +  V  +SGG+ +I V+ AGEL+PA  V DA+   T EM   A YY+ GK P   
Sbjct: 60  GAERFANLVNEMSGGRLKIKVYAAGELVPALEVFDAVSRGTAEMGHGAPYYWKGKVPAAQ 119

Query: 108 FSCAVPFGLTARQTDSWKEYGNGRKLLDAFFAQYNFRTASAGNTGTQMGGWYRKEIKTVA 167
           F CA+PFG  A++ ++W   G G +L +  +  Y     + G TG Q  GW+ KEI +V 
Sbjct: 120 FFCALPFGPNAQEMNAWLHRGGGMQLWEEVYKPYGVLPMACGATGVQTAGWFNKEINSVD 179

Query: 168 DLKGLKMRMGGGVFGEAMAKLGVVSQNMPAGDVYQALEKGTLDAAEFVGPYDDEKLGFNK 227
           D KGLKMR   G+ GE + K+G    NMPAG+++ AL+ G +DA E++GPY+D  LG +K
Sbjct: 180 DFKGLKMRT-PGLGGEVLTKMGGTVVNMPAGEIFTALQTGAIDATEWIGPYNDLALGLHK 238

Query: 228 VAPYYYYPGWWEGGADLEFFINNKAFAKLSDENKAILDAATKVAARDMIAKYDAYNPVAL 287
            + YYY PGW E     E  +N KA+  L D+ KAI+ AA +    DM+  Y+A N  AL
Sbjct: 239 ASKYYYTPGWQEPNVTFELDVNLKAWDTLPDDLKAIVRAAARDVNGDMLDDYNAKNMEAL 298

Query: 288 KRLVAAKTELKPFPKAVMDAGFKASMEVFAEHEAKSPEFKKIHQDMRAF 336
           ++L     E++  P  V+    + + EV        P   K+ +   A+
Sbjct: 299 EQLREQGVEVRRLPDEVLARLKEVAAEVVDASAKADPVASKVWEQQSAY 347