Pairwise Alignments

Query, 360 a.a., TRAP transporter solute receptor, unknown substrate 6 from Variovorax sp. SCN45

Subject, 372 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  193 bits (490), Expect = 7e-54
 Identities = 117/360 (32%), Positives = 192/360 (53%), Gaps = 13/360 (3%)

Query: 1   MDRRSLIKNAGIAGVLAAGIAPAVHAQTAVRWRLASSFPRSLDTIFGSAEMLSKTVKALS 60
           M R  L+  AG+A +  +  A     +  +      +FP   DT    A M  K    +S
Sbjct: 20  MKRSVLLIAAGVALLTTSAFAEEKVYRLTLAETWGPNFPIFGDTTKNMAAMAEK----MS 75

Query: 61  GGKFEISVHPAGELMPAFGVVDALQGDTLEMAQTAAYYFTGKDPIFAFSCAVPFGLTARQ 120
            G+ +I +  A +     GV D ++    +M  +A+YY+ GK P   +  ++PFG+T  +
Sbjct: 76  NGRLQIRIDSANKHKAPLGVFDMVKSGQYDMGHSASYYWKGKVPNTLYFTSMPFGMTTGE 135

Query: 121 TDSWKEYGNGRKLLDAFFAQYNFRTASAGNTGTQMGGWYRKEIKTVADLKGLKMRMGGGV 180
             +W  +G G +L++  ++ +N  +   GNT  QMGGW++KEI +V DL+GLKMR+  G 
Sbjct: 136 QYAWFYHGGGMELMEKVYSPHNMLSFPGGNTDVQMGGWFQKEINSVEDLQGLKMRI-PGF 194

Query: 181 FGEAMAKLGVVSQNMPAGDVYQALEKGTLDAAEFVGPYDDEKLGFNKVAPYYYYPGWWEG 240
            GE +A+LG    N+  G++Y +LE+ T+DA E+VGP  D ++GF+K+AP YYY GW E 
Sbjct: 195 AGEVLAELGAKPTNIAPGELYTSLERRTIDALEWVGPSLDLRMGFHKIAP-YYYTGWHEP 253

Query: 241 GADLEFFINNKAFAKLSDENKAILDAATKVAARDMIAK---YDAYNPVALKRLVAAKTEL 297
             +L+F +N K + KL ++ + IL  A + AA DM  +       N V++ +      ++
Sbjct: 254 ATELQFLVNQKTWDKLPEDLREILRVAMRTAAYDMYVQSVHESGKNWVSITQ-EFPDVKV 312

Query: 298 KPFPKAVMDAGFKASMEVFAEHEAKSPEFKKIHQDMRAFQRDQILWNRFSEYPFNQYMNS 357
           K FP  V+ A  + +  + A+H A+ P  K+I +    + +    W   S      Y+NS
Sbjct: 313 KTFPAPVIKALREVNDRLLAKHAAEDPLAKEIQESQANYLKQTRSWTDIS---LRAYLNS 369