Pairwise Alignments

Query, 360 a.a., TRAP transporter solute receptor, unknown substrate 6 from Variovorax sp. SCN45

Subject, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  193 bits (490), Expect = 7e-54
 Identities = 107/316 (33%), Positives = 178/316 (56%), Gaps = 4/316 (1%)

Query: 34  LASSFPRSLDTIFGSAEMLSKTVKALSGGKFEISVHPAGELMPAFGVVDALQGDTLEMAQ 93
           LA ++  +   +  + + ++K    +S G+ +I +  A +     GV D ++    ++  
Sbjct: 37  LAETWGANTPILGDAPKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGH 96

Query: 94  TAAYYFTGKDPIFAFSCAVPFGLTARQTDSWKEYGNGRKLLDAFFAQYNFRTASAGNTGT 153
           +++YY+ GK P   F  ++PFG+ A +  +W  YG G  L++  +A +N  +   GN+  
Sbjct: 97  SSSYYWKGKVPNTLFFSSMPFGMIATEQYAWFYYGGGMPLMEKVYAPHNLLSFPGGNSDI 156

Query: 154 QMGGWYRKEIKTVADLKGLKMRMGGGVFGEAMAKLGVVSQNMPAGDVYQALEKGTLDAAE 213
           QMGGW++KEI +V DL+GLKMR+  G  GE +AKLG    N+  G++Y +LE+GT+DA E
Sbjct: 157 QMGGWFKKEINSVDDLQGLKMRI-PGFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALE 215

Query: 214 FVGPYDDEKLGFNKVAPYYYYPGWWEGGADLEFFINNKAFAKLSDENKAILDAATKVAAR 273
           +VGP  D ++GF+K+AP YYY  W E G++ +F +N K +  L  + + IL+ A +VAA 
Sbjct: 216 WVGPAFDLRMGFHKIAP-YYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAF 274

Query: 274 DMIAKYDAYNPVALKRLVAAKTELK--PFPKAVMDAGFKASMEVFAEHEAKSPEFKKIHQ 331
           DM  +    N  +   + +   ++K   FP AV+ A  +A+ E+  E  A  P  K+I  
Sbjct: 275 DMYNQAIDANATSWAAMKSEYPDIKVRDFPPAVLAALRQANNELLQEQAASDPLAKEIID 334

Query: 332 DMRAFQRDQILWNRFS 347
             +A+      W R S
Sbjct: 335 SQQAYLTKVRDWTRIS 350