Pairwise Alignments

Query, 293 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 307 a.a., Branched-chain amino acid ABC-type transport system, permease components from Pseudomonas stutzeri RCH2

 Score =  182 bits (463), Expect = 6e-51
 Identities = 108/301 (35%), Positives = 165/301 (54%), Gaps = 13/301 (4%)

Query: 4   QQLVNALSLGCVYALFALGFTLIFGVLGVINLSHGAVFMVGAYAA------AEFMRVSGM 57
           QQL+N L++G  YAL A+G+T+++G++G+IN +HG V+M+G+Y           M +  +
Sbjct: 9   QQLINGLTVGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVTFIAIVGLSMMGLDAL 68

Query: 58  PLWVGLPFAFAFC--GVLGFLVDVLVLKPLRKRNAPHLIPMIATIGVAIILNNGIQGIFG 115
           P+ +   F  A       G+ ++ +  +PLR  N   LIP+I+ IG++I L N +     
Sbjct: 69  PILMIGAFVAAMIVTSAYGYSIERVAYRPLRGSN--RLIPLISAIGMSIFLQNVVLLAQD 126

Query: 116 AENLRFP---PGTIPDDALVFAGIHVTVLELGIVLASFVLMGVLMLSLQRTQLGRALRAI 172
           +++   P   PG +        G+ ++ +++ I + +FV M  L L + R++LGRA RA 
Sbjct: 127 SKDKAIPNLMPGNLVIGESAMNGVVISYMQILIFVVTFVAMYGLTLFISRSRLGRACRAC 186

Query: 173 AESPKAAYLVGVNVEGLFYLTSFVAAGLGGVAGVLIGLYSNALFPLMGQPMLEKGIAVII 232
           AE  K A L+G+N   +  LT  + A L  VA VLI +    + P +G     K     +
Sbjct: 187 AEDLKMANLLGINTNSIIALTFVIGAALAAVAAVLISMQYGVINPHIGFLAGIKAFTAAV 246

Query: 233 LGGMGDIRGALLGGLFLGFAEVLSVAYVGSNMRDAVAFGLLFLVLLVRPKGLFGSLKERK 292
           LGG+G I GA+LGGL LG AE       G   +D VAF LL LVLL RP G+ G  +  K
Sbjct: 247 LGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFSLLILVLLFRPTGILGRPEVEK 306

Query: 293 V 293
           V
Sbjct: 307 V 307