Pairwise Alignments

Query, 307 a.a., (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) from Variovorax sp. SCN45

Subject, 317 a.a., polyprenyl synthetase family protein from Methanococcus maripaludis S2

 Score =  137 bits (345), Expect = 3e-37
 Identities = 93/278 (33%), Positives = 140/278 (50%), Gaps = 9/278 (3%)

Query: 25  LANVESALSRWVGVDAPVLLGDAMRYAVLDGGKRLRPLLVLAASEAVGGNKAAALRAACA 84
           L+ ++S L +++  D    L  A ++ +L GGKR+RP L +             +  A +
Sbjct: 8   LSKIDSELKKYMEKDTK--LYGASKHLLLAGGKRVRPYLSILTYLLKKDELTEIMAPALS 65

Query: 85  TELIHAYSLVHDDLPCMDNDVLRRGKPTVHVKFGEADALLAGDALQALAFELLTPEDDEI 144
            ELIH Y+LVHDD+  MDND  RRG PTVH  +GE  A+LAGD L A AFE L+  +D  
Sbjct: 66  VELIHNYTLVHDDI--MDNDDQRRGIPTVHTVYGEPIAILAGDLLYAKAFEALSNIEDSN 123

Query: 145 PAATQALLCRLLARAAGSQGMAGGQAIDLASVGIALDETRLREMHRLKTGALLQGSVEMG 204
            A     + ++L++A         + ++       LDE    EM   KTGAL+   VE+G
Sbjct: 124 KAHE---VLKVLSKACVEVCEGQTEDMEFEERFPTLDE--YLEMISKKTGALIVAPVEIG 178

Query: 205 AACGSVTPDALAALRDYGAAIGLAFQVVDDILDVTADSQTLGKTAGKDAAADKPTYVSLL 264
           A     TP+   AL +Y   IG+ FQ+ DD+LD+  D +T+GK  G D    K T + + 
Sbjct: 179 AVMADCTPEEREALCNYAKRIGMTFQIQDDVLDLIGDQKTIGKPVGSDIVEGKKTMMVIH 238

Query: 265 GLDGARAQARQLLADALAALEKSGLADTSALRALAHMV 302
            ++      ++ L   L   + +      A+  LA  +
Sbjct: 239 AMENLSEDKKERLLQILGNQDANQQEVAEAIELLADSI 276