Pairwise Alignments

Query, 310 a.a., putative membrane protein from Variovorax sp. SCN45

Subject, 289 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 64.3 bits (155), Expect = 3e-15
 Identities = 85/298 (28%), Positives = 129/298 (43%), Gaps = 33/298 (11%)

Query: 6   MVLGAFLFATMSVVVKIASEWFNSGEMVLGRGLIGIVF---LWLLARNRGVSLATRYPGM 62
           ++LG    A   V +K      ++   +L R +  IV    LWL A        T +  +
Sbjct: 12  LLLGNVFSALYDVSIKWLPAQSDATMFLLLRQVTAIVMMLPLWLYAGRP----RTAFLKL 67

Query: 63  HAWRSTIGVISLGAWFYAIAHLPLATAVTLNYMSSVWVAAFLVGGALLAWVPVPGRDGRV 122
           H  R+  G +        +  LPLAT  +L Y + + +   +V G L             
Sbjct: 68  HMIRANSGAVGGLLLILGLLSLPLATVSSLFYSAPLMI---IVMGMLFL----------K 114

Query: 123 ERPPLQGTLAMTVLAGFAGVVLMLKPTVSGNEGFGGMLGLLSGLTAAFAYMQVVALSRIG 182
           ER   Q  LA TVL GF G++++L+P+         +  L+S +  A   + +  L    
Sbjct: 115 ERLSSQQILA-TVL-GFIGILIILRPS---EMNLAALAVLVSAIVFAANQLMLRWLPSSE 169

Query: 183 EPELRTVFYFAVGSAVAGAFATAATGFSGGASWTWQHALWLLPIGLLAALGQLCMTRAYA 242
              +  + Y  +   +   FA A  GF+G  SW       L  I LLA   QL    AY 
Sbjct: 170 AASVTVICYNLLSLPLVIGFA-AWQGFAG-FSWPVLGIAVLSNIFLLAY--QLFSVPAYR 225

Query: 243 TAKTQAGTLVVANLQYSGIVFAAFYGVVLFNDRIDAAGWGGMALIIASGIAATVLRQR 300
             K QAG + VA  +YSG++F   +G + F++ +D  GW G ALI+   I   VL +R
Sbjct: 226 --KAQAGEIAVA--EYSGLLFCVLFGWLWFDEWLDPLGWLGAALIVLPTILLPVLTRR 279