Pairwise Alignments

Query, 420 a.a., ABC-type antimicrobial peptide transport system, permease component from Variovorax sp. SCN45

Subject, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 88/423 (20%), Positives = 170/423 (40%), Gaps = 68/423 (16%)

Query: 2   KALFSIAWRSAWNRRFTLALTVFSIALSTFLLLGVERIRTELRENFASSVSGTDLIVGAR 61
           K + S A R+   ++    LT+  I +    ++ +  +   ++      +S        +
Sbjct: 4   KDVVSFAGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEIS--------K 55

Query: 62  TGSTQLLLYSVFRIG--AATNNISWKSVQALEAHPGVDWVV-------PLSLGDSHRGFA 112
            G++ + +Y   +I   A + N + + ++A+E   GVD V+        ++  D     +
Sbjct: 56  AGASVITVYPSQQITSIAMSKNFNDRDLKAVEDVRGVDVVLYGWFGGTQVTYHDQEYYSS 115

Query: 113 VLATSPEYFTRF---RYGDRQLLKMREGKPFSELFDAVVGAEVADKL---GYHVGQKITL 166
           V AT    +  F    YG  +L K R  K  S+ +  V+G  +A         +G KI  
Sbjct: 116 VFATKSSTYQIFFTEAYG-YELEKGRWMKD-SDKYTCVIGYSLAHDTFDREIDIGDKI-- 171

Query: 167 AHGSGELNVAEHADKPFTVVGVLARTGTPVDRTVHIGLPAMEAIHLEWVGGAPMPGVHIP 226
                E+N     DK + VVG+L + G P D                         + IP
Sbjct: 172 -----EIN-----DKKYKVVGILEQIGNPDDDN----------------------SIVIP 199

Query: 227 AEQVRKFDLTPKNVTAALVGLKNRAAVFGVQRWISTYT----GEPLMAILPGVALDE-LW 281
            E   +           +V +K+   V  V   I        G+   ++L    L E + 
Sbjct: 200 YEAASEVFDVDDEYNMFMVKIKDGEDVTKVSEDIEDELEDSRGDENFSVLTAEQLAESIS 259

Query: 282 SVIGIGENALLLMSALVALVSLAGLVSVVMAGLNERRRELAVLRAVGAGLRHVLALLALE 341
           S+  +    L+ ++ +  LV   G+ + +   + ERR+++ +L+A+GA    +L++  +E
Sbjct: 260 SIFSVLTIFLVGVAGISLLVGAVGISNTMHMSILERRKDIGILKALGAENNTILSIFVVE 319

Query: 342 GAMVTVLGVAFGVVMAVLGIALLSPWLQAQFGLTLSLSEPTLNEWLLMASLLVAGWLASL 401
              + + G   G ++ +L IA    ++ A  G  L  +      W L+  +LV  ++  +
Sbjct: 320 AGFLGLFGGIVGTILGIL-IAKAIEYVAAISGYGLIRA---WISWELIVGVLVFSFVVGI 375

Query: 402 LPG 404
           L G
Sbjct: 376 LSG 378