Pairwise Alignments

Query, 682 a.a., Exonuclease SbcC from Variovorax sp. SCN45

Subject, 458 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  135 bits (341), Expect = 3e-36
 Identities = 113/510 (22%), Positives = 213/510 (41%), Gaps = 99/510 (19%)

Query: 71  QLYEMVAPIALYPDKLVAQVLAGATYPEQITAAHDWLAQNRSLKAGPLADAANQQPWDPS 130
           +L +M+APIALYPD L+  +L  +TYP ++  A+ W  +N+SL+     + A ++ WDPS
Sbjct: 40  ELAQMLAPIALYPDSLLTHILIASTYPLEVVQANRWRNKNKSLEGAEAVNRAEKKDWDPS 99

Query: 131 VKSLTAFRSVVDQMAANIPWTESLGKAYYNDPTDVMNAIQVMRQRAAKAGRLKNNDKLRV 190
           V +L AF  ++ +++ ++ WT+ LG  +  D   V+++IQ +RQ+A +A    + + ++V
Sbjct: 100 VTALVAFPDLLQRLSDDLEWTQKLGDTFLQDEERVLDSIQSLRQQAERANAFDDMENMKV 159

Query: 191 ATAATTPPQNYAPAPDSQAVYYSGTPVIEAPPQYITIEPVQPDVVYVPAYDPQVIYG--- 247
                                           + I IEPVQ +V+YVP YD +V+YG   
Sbjct: 160 TKV----------------------------NRQIVIEPVQREVIYVPYYDTRVVYGHWH 191

Query: 248 --TPQPVYPGYAYAP-AVEVAPGYSQGQVIAAGALAFGAGIVVGAALERHDWGWHSWNMN 304
                PVY  +AY P      PG+       +G   F +GI +            S+N  
Sbjct: 192 WYNYPPVY--WAYPPHYARYYPGH------ISGHFYFNSGIHI------------SFNYF 231

Query: 305 WGAPGWRGRDNGAPPPPAYRPAVVYNNNTYISRSTTVVNNVNNVRNVYNNNNGAPRGLPA 364
           + A  WR R             +V  ++ + +R       V         ++GA R    
Sbjct: 232 FSAFSWRQRH------------IVVTHHHHTTRYRPYSRIV--------TSSGAQR---- 267

Query: 365 GAAAPNFAAAPGFAPQQQQQMQQQAALAQQQQQQQARQQEALLRQQQMQQQGQQRAQQQA 424
                              +   +  +A +  + +AR  +   R  +   +     ++ +
Sbjct: 268 ----------------WHHKPVHRHGVAYRSPKVKARYDK--YRPNRYDVKHNSSMERYS 309

Query: 425 QAQQQQVQQAQQLHAQQLQQQQRQQVQQAQLQQQQQQEQLRRQQQAQQQAQQQHQPARLA 484
            ++Q +  QA+  +A Q+Q+++ Q         + Q +   R Q AQ+   + ++     
Sbjct: 310 NSKQAKPSQAKHYNAAQVQKRREQNFSHKLSDARSQHD---RHQNAQKTPTKYYEKRDRL 366

Query: 485 GQAPGAQQEQQRQQQQAQQEQSRRQQMEHQQQAQQQARAQQQAQAQQQQQQMQHQREQQL 544
                A +    +     +E +R +  +     Q++ ++ Q+     QQQ  Q +R  Q 
Sbjct: 367 SLNDKANRSSSNKADNRTKEWNREKSPQRNDSYQREMKSHQRDNKSHQQQSYQRERSHQP 426

Query: 545 QQQQAQNQARQQQQAQQEQSRRQQMEQQQQ 574
            +   + ++ Q    +   S  QQ   +Q+
Sbjct: 427 VKSPQRERSHQTNNGRGASSHNQQGRTKQR 456