Pairwise Alignments

Query, 311 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 326 a.a., putative peptide ABC transporter, permease protein from Phaeobacter inhibens DSM 17395

 Score =  211 bits (537), Expect = 2e-59
 Identities = 123/320 (38%), Positives = 185/320 (57%), Gaps = 12/320 (3%)

Query: 1   MGYIVRRFLSTLPVMAVVAVVVFLLIHLSPGDPAALIAGDLATTEDIEKLRATLGLNLPL 60
           + YI+RR + ++ V+ VV +V F +     GDP   + G   TTED+ +LRA LGL+ P 
Sbjct: 2   LAYIIRRIMQSVLVLFVVGLVAFSMFRFV-GDPIENMLGQERTTEDVVRLRADLGLDQPF 60

Query: 61  WQQFTLWLGKLFTGDLGTSIFTQVPVAQLLGQRLEPTVSIAALTMLITLVVSVPLGTLAA 120
             Q+  +L     G+ G S     PVA +L +R   T+ +A ++  + +V+ + LG L A
Sbjct: 61  PVQYWRFLENAAQGNFGLSYRQGRPVADILIERAPATLELALVSGTLAMVLGIGLGVLTA 120

Query: 121 YRAGSWIDRLVMLFAVLAFSVPVFLVGYLLVYSFAIQLPWFPVQGYVRLADGAGEW---- 176
            R   W+   +M  +++  S+P FL+G LL+Y F+++L W P  G        G+W    
Sbjct: 121 IRRDGWLANTIMTASLIGVSLPTFLIGILLIYVFSVELGWLPSFGRGETV-MLGQWSTGF 179

Query: 177 -----LRSLVLPCVNLALVYIALVTRMTRATVLEVLHEDYIRTARAKGLGVLPV-LGHAL 230
                L SLVLP + L L  + L+ R+ R+ +LEVL  DYIR ARA+GLG   V   HAL
Sbjct: 180 LTKSGLMSLVLPSITLGLYQMTLIMRLVRSEMLEVLRTDYIRFARARGLGERAVYFRHAL 239

Query: 231 RNAAIPIATTIGAGIALLIGGVVVTETVFAIPGVGRLVIDSVQRHDYPVIQSVLLLSAGV 290
            N  +P+ T IG  +  +I   ++TETVF  PGVG L I++VQ  D PV+ + L+L + +
Sbjct: 240 VNTMVPVITIIGLQLGSIIAFAIITETVFQWPGVGLLFINAVQFVDIPVMAAYLMLISVL 299

Query: 291 YVLINLLIDLSYRLFDPRIQ 310
           +V INL++DL Y L DPR++
Sbjct: 300 FVGINLIVDLLYFLIDPRLR 319