Pairwise Alignments

Query, 381 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 394 a.a., Extracellular ligand-binding receptor (NCBI) from Rhodospirillum rubrum S1H

 Score = 88.6 bits (218), Expect = 3e-22
 Identities = 83/300 (27%), Positives = 131/300 (43%), Gaps = 20/300 (6%)

Query: 53  IGGQKINYIVLDDASDTTAAVNNTRKLIAENKVDVILGSTTTPASLAMIDVASEAQTPMI 112
           +GG+ ++ +  D   D   A    R  + + +V  +LG  ++  S+A   +  +   P +
Sbjct: 77  VGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQL 136

Query: 113 SVAASARIIEPMDAK-KKWVFKTPQNDIMMSLAIAEHMAANGVKTVAFIGFSDAYGEGWS 171
           S  A+     P   K   W F+            A  M  +G  +VA IG +  +G   +
Sbjct: 137 SPTAA----HPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSA 192

Query: 172 QEFAKAADLKKIKVVANERYARTDTSVTGQALKIMAAKPDAVLVAGSGTPAALPQKTLKE 231
           Q F KA +L+   VV NE     +        +I    P A+ +A +   AA   + L+ 
Sbjct: 193 QAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRA 252

Query: 232 RGYGGKMYQTHGVANADFLRVGGKDVEGTFLPAGPVLVAEQLPASNPVKKSALAYVAAYE 291
           RG    +Y +  + +  F+ +GG  VEG  L    V     L AS+PV    + +V+AYE
Sbjct: 253 RGSALPVYGSSALYSPKFIDLGGPAVEGVRLATAFV-----LGASDPV---VVEFVSAYE 304

Query: 292 AAYGKGSVSTFGAHAWDAGLVMSSAVPIALKKAQPGTPEFRAALRDALEQTKDVAGAHGV 351
             YG    + F AH +DA  +M +AV       + G    R +LRDAL  T   AG  G+
Sbjct: 305 TLYG-AIPTLFAAHGYDAVGIMLAAV------GRAGPEVTRESLRDALAATDRYAGVTGI 357