Pairwise Alignments

Query, 329 a.a., hypothetical protein PA3071 from Variovorax sp. SCN45

Subject, 309 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 94.4 bits (233), Expect = 3e-24
 Identities = 72/236 (30%), Positives = 114/236 (48%), Gaps = 20/236 (8%)

Query: 43  LQGDYRTLMRGVGLDLADLREYQHHDDVRHIDWNVTARLQTPHVRVFTEDREMAAWFVLD 102
           L G   + ++G G++ A++R YQ  DDVR IDW VTAR    H ++F E+RE     +LD
Sbjct: 41  LAGHRASSIKGRGMEFAEVRHYQAGDDVRTIDWRVTARTGKAHTKLFVEERERPVLLLLD 100

Query: 103 LSRSVDFGSGLKAKREISAGFVGVLARLLTRHGNRVGALVYGSDLEAVIPPRSGRRHVLH 162
           LS S+ FGS L  +   +A     L      HG+R+GAL+        + PRS +  +L 
Sbjct: 101 LSHSLYFGSSLMLQSVQAAHLAATLGWAAVGHGDRLGALIASEAEHLELKPRSRQTGMLA 160

Query: 163 LLHAMDK-------RADKAESTPQQ--KGMTRLDTLLKSAAALMPRRSTVFVVSDFLS-E 212
           L+ A+++       + ++    P+   K   RL  + K         S ++++SD     
Sbjct: 161 LISAIEQIHQQQLHQLNQPVKQPEHIFKACQRLRRIAKPG-------SLIWIISDGSHFG 213

Query: 213 PGWERPLGQLALRHEVIAVRLFDPLE---LELPDLGLVPLRDAETGEQLWVDTHDA 265
           P    PL +L    ++ A  + DPL    L+LP     P+RD +    L   ++DA
Sbjct: 214 PQCLGPLSELKRHCDIGAFLITDPLRQGTLKLPPQFQFPVRDGDKELMLDRRSYDA 269