Pairwise Alignments

Query, 286 a.a., Putative deoxyribonuclease YjjV from Variovorax sp. SCN45

Subject, 255 a.a., YchF/TatD family DNA exonuclease from Vibrio cholerae E7946 ATCC 55056

 Score =  107 bits (266), Expect = 4e-28
 Identities = 75/265 (28%), Positives = 125/265 (47%), Gaps = 22/265 (8%)

Query: 4   FIDTHCHLDAHEFG---AEMPAIRARAAGLGVAMCVIPAVGAFNFQTVRELAHRQGDAYA 60
           F+D+HCHLD  ++    A++  +  +A    V   +   V   +F  +  +       YA
Sbjct: 2   FVDSHCHLDKLDYQDLHADVSDVLDKAHQAKVEYLLSVGVTLDSFPKMLAMIEPFSQVYA 61

Query: 61  -LGIHPLCTGAAADADLEALDAELSARRDDPRLVAVGEIGLDYFVEGLDADRQERFFHTQ 119
             G+HPL   +    DL    A+       PR+VA+GE GLDY  +   AD Q+  F  Q
Sbjct: 62  SCGVHPLDVQSDFSLDLFHQYAQ------HPRVVAIGETGLDYHYQPETADLQKLRFRQQ 115

Query: 120 LQLARKHGLPILIHVRRSVDKVLKHLRQTAGGKPWLGIAHAFNGSEQQAGACIALGLKLG 179
           ++ A     P++IH R +    L+ LR+    +   G+ H F      A A + LG  + 
Sbjct: 116 IETAVALNKPLIIHTRNAQQDTLQLLRE-GKAQQCGGVIHCFTEDLAFAQAAMELGFYIS 174

Query: 180 FGGAVTFERALQLRRLAASLPIESIVMETDAPDIQPHWLYRTQAQRDAGQPQGRNEPGEL 239
             G VTF +A  L+ +  +LP++ +++ETD+P + P                  N+P  +
Sbjct: 175 ISGIVTFRQATDLKEVVKALPLDRLLIETDSPYLAP-----------VPHRGKENQPAYV 223

Query: 240 PRIAEVVAGLRGIGIEELALATTRN 264
             +A  +A L+G+ + E+A  TT+N
Sbjct: 224 VEVAAYIAALKGVSLTEVAQKTTQN 248