Pairwise Alignments

Query, 430 a.a., Replication-associated recombination protein RarA from Variovorax sp. SCN45

Subject, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 38/186 (20%)

Query: 13  LRPRTLGEVIGQQHLLGPGMSLRIAFESGQPHS-----CILWGPPGTGKTTIARLMADAF 67
           +RP+ L +  GQ H+      + I  ++ Q         +++GPPG GKTT+A ++A+  
Sbjct: 25  IRPKKLADYQGQDHVRD---QMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANEM 81

Query: 68  DAQFLSISAVLGGVKDIREAVDLATAARDGLTQQRTIVFVDEVHRFNKSQQDAFLPHVES 127
                + S  +     + +A DLA    +   ++  ++F+DE+HR +   ++   P +E 
Sbjct: 82  GVNIRTTSGPV-----LEKAGDLAALLTN--LEENDVLFIDEIHRLSPMVEEVLYPAMED 134

Query: 128 --------------------GLFTFIGATTENPSFEVNSALLSR-AAVYVLQSLNEDDLK 166
                                 FT IGATT   S  + S L  R   V  L+     DL+
Sbjct: 135 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEYYKVADLQ 192

Query: 167 QIVTRA 172
            IV R+
Sbjct: 193 HIVQRS 198