Pairwise Alignments

Query, 430 a.a., Replication-associated recombination protein RarA from Variovorax sp. SCN45

Subject, 315 a.a., replication factor C small subunit from Methanococcus maripaludis S2

 Score = 57.0 bits (136), Expect = 8e-13
 Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 16/214 (7%)

Query: 7   QPLAERLRPRTLGEVIGQQHLLGPGMSLRIAFESGQPHSCILWGPPGTGKTTIARLMA-- 64
           +P  E+ RP TL EV+G   ++          +   PH  +  G PG GKTT A  +A  
Sbjct: 3   KPWVEKYRPETLSEVVGHHEIIK--RLTNYVEKKSMPH-LLFSGSPGVGKTTAALALAKD 59

Query: 65  ---DAFDAQFLSI-SAVLGGVKDIREAV-DLATAARDGLTQQRTIVFVDEVHRFNKSQQD 119
              D +   FL + S+   G+  IR  V D A     G    + ++F+DE        Q+
Sbjct: 60  LYGDTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFK-VIFLDESDALTSDAQN 118

Query: 120 AFLPHVE--SGLFTFIGATTENPSFEVNSALLSRAAVYVLQSLNEDDLKQIVTRAQDIQA 177
           A    +E  S +  FI  +   PS ++   + SR A++    L  +DL + +    + + 
Sbjct: 119 ALRRTMEKYSDICRFI-LSCNYPS-KIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKEN 176

Query: 178 VPAIDTAAVDRLVAYADGDARRLLNTLETLAVAA 211
           +  ++   +D ++  ++GD R+ +N L+T A  +
Sbjct: 177 LN-LEKGGIDAIIYVSEGDMRKAINVLQTAAAVS 209