Pairwise Alignments

Query, 309 a.a., Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 307 a.a., ABC transporter for L-leucine/L-phenylalanine/D-alanine, permease component 1 LivH (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  253 bits (646), Expect = 4e-72
 Identities = 137/302 (45%), Positives = 204/302 (67%), Gaps = 15/302 (4%)

Query: 6   QQIINGLVLGSMYALIALGYTMVYGIINLINFAHGEVLMVGALTSW-TIIGLMKDGMPNT 64
           QQ++NGL +GS YALIA+GYTMVYGII +INFAHGEV M+G+  ++  I GL   G+ + 
Sbjct: 9   QQLVNGLTVGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIAIAGLAMMGLDSV 68

Query: 65  PGWLILLIALVIACIVAATLNFVIEKVAYRPLRNSPKLAPLITAIGMSILLQTLAMIIWK 124
           P  L++  A + + +V ++  + IE++AYRPLR S +L PLI+AIGMSI LQ   ++   
Sbjct: 69  P--LLMTAAFIASIVVTSSYGYSIERIAYRPLRGSNRLIPLISAIGMSIFLQNTVLLSQD 126

Query: 125 PTNKAYPNLLPTD-PIHVAGA---VISPTQVMILSVTAFSLVVLMWLVNYTKLGRAMRAT 180
             +K+ PNL+P +  I   GA   +IS  Q+++  VT  +++ L   ++ ++LGRA RA 
Sbjct: 127 SKDKSIPNLIPGNFAIGPGGAHEVLISYMQIVVFVVTLVAMLGLTLFISRSRLGRACRAC 186

Query: 181 AENPRVAALMGIRPDMVISATFIIGAVLAAIAGVMYASNYGIAQHAMGFLPGLKAFTAAV 240
           AE+ ++A L+GI  + +I+ TF+IGA LAAIA V+ +  YG+     GFL GLKAFTAAV
Sbjct: 187 AEDIKMANLLGINTNNIIALTFVIGAALAAIAAVLLSMQYGVINPNAGFLVGLKAFTAAV 246

Query: 241 FGGIGNLAGAVVGGILLGLIEAIGSGYIGTITGGVLGSNYSDIFAFIVLIVMLTLRPSGL 300
            GGIG++ GA++GG++LG+ EA G+         + G  Y D+ AF +L+++L  RP+G+
Sbjct: 247 LGGIGSIPGAMLGGLVLGVAEAFGA--------DIFGDQYKDVVAFGLLVLVLLFRPTGI 298

Query: 301 LG 302
           LG
Sbjct: 299 LG 300