Pairwise Alignments

Query, 309 a.a., Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 304 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

 Score =  230 bits (587), Expect = 3e-65
 Identities = 136/314 (43%), Positives = 192/314 (61%), Gaps = 27/314 (8%)

Query: 1   MDILLQQIINGLVLGSMYALIALGYTMVYGIINLINFAHGEVLMVGALTSWTIIGLMKDG 60
           M   LQQ+INGL LG++Y LIA+GYTMVYGII +INFAHGE+ M+GA    T+I  +  G
Sbjct: 1   MAYFLQQLINGLTLGAIYGLIAIGYTMVYGIIGMINFAHGEIYMIGAFL--TVICFVLLG 58

Query: 61  MPNTPGW-LILLIALVIACIVAATLNFVIEKVAYRPLRNSPKLAPLITAIGMSILLQTLA 119
            P      L LL+ LV++ +  A   + +E++AYRPLR S +LAPLI+AIGMSI LQ   
Sbjct: 59  GPEFASVPLALLLILVVSMVFTAAYGWTVERLAYRPLRGSFRLAPLISAIGMSIALQNYV 118

Query: 120 MIIWKPTNKAYPNLLPTDPIHVAG----------AVISPTQVMILSVTAFSLVVLMWLVN 169
            I      K      P  P+   G            IS  Q+ I  +T   ++   +++ 
Sbjct: 119 QITQGARVK------PIQPVIRGGFEVFNQGGFAVQISYLQIFIWILTIGLMMGFTYVIT 172

Query: 170 YTKLGRAMRATAENPRVAALMGIRPDMVISATFIIGAVLAAIAGVMYASNYGIAQHAMGF 229
            T +GR  RA  ++ ++A+L+G+  D  IS TF+IGA+LAA+AG++    YG+    +GF
Sbjct: 173 QTSMGRQQRACEQDRKMASLIGVNVDRTISLTFVIGALLAAVAGLITTLYYGVIDFYIGF 232

Query: 230 LPGLKAFTAAVFGGIGNLAGAVVGGILLGLIEAIGSGYIGTITGGVLGSNYSDIFAFIVL 289
           L G+KAFTAAV GGIG+L GA++GG+L+GLIEA  S Y  TI        Y D+  F +L
Sbjct: 233 LAGMKAFTAAVLGGIGSLPGAMLGGLLIGLIEAFWSAYF-TI-------EYKDVATFGIL 284

Query: 290 IVMLTLRPSGLLGE 303
           +++L  +P+G LG+
Sbjct: 285 VLVLIFKPTGFLGK 298