Pairwise Alignments

Query, 402 a.a., Branched-chain amino acid ABC transporter, permease protein LivM (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 373 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

 Score =  160 bits (404), Expect = 7e-44
 Identities = 96/311 (30%), Positives = 162/311 (52%), Gaps = 36/311 (11%)

Query: 41  YVLLALGLNIVVGYAGLLDLGYVAFFAVGAYLFALMGSSHLTETFPWFAQMFPNGMHTSL 100
           Y + ALGLNI+VG+ G + LG+ AFF VGA+  A + +                 +   +
Sbjct: 76  YAIAALGLNILVGFTGQISLGHAAFFGVGAFSSAWLNTR----------------VGLPV 119

Query: 101 LIVIPLALVVAGCLGVLLGAPTLKLRGDYLAIVTLGFGEIIRVFLNNLDQPVNITNGPKG 160
           L+ IPLA +++   G+L GAP  +++G YLAI TL    II      +D     T G  G
Sbjct: 120 LVCIPLAGLMSAAAGLLFGAPAARIKGLYLAIATLAAQFIIEDLFVRMDW---FTGGSSG 176

Query: 161 ITAIDSIKFWGLDLGKAWKFDGFTISSVSLYYYLFLALVVATVIISHRLQTSRIGRAWMA 220
             A   +               F   + + Y+ L L+  +   +++  L  SR GRA++A
Sbjct: 177 AMADTPM------------LGSFAFDNDARYFLLSLSFTIVLFVMAANLMRSRDGRAFVA 224

Query: 221 IREDEIAAKAMGINTRNMKLLAFGMGASFGGVSGAMFAAFQGFVSPESFSLMESVMIVAM 280
           +R+  ++A+ MGI     ++++FG+ A + G+ GA++  +  FVS E+F+++ S+  + M
Sbjct: 225 LRDHYLSAEVMGIALTRYRVMSFGIAAFYAGIGGALYGHYLMFVSAEAFTILLSIQFLGM 284

Query: 281 VVLGGIGHLPGVILGAVLLAALPEVLRYVAGPLQAATDGRLDASI-----LRQLFIALAM 335
           +++GG+G + G +LG + + ALPEV+  V   LQ    G   A I      R++ I  A+
Sbjct: 285 IIIGGLGSVMGAMLGTIFMVALPEVMGAVIAALQTTQWGNRPAVINGLPFFREMAIGAAI 344

Query: 336 IVIMLLRPRGL 346
           I+ ++  P GL
Sbjct: 345 ILFLIFEPDGL 355