Pairwise Alignments

Query, 258 a.a., Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 278 a.a., high-affinity branched-chain amino acid transport ATP-binding protein from Phaeobacter inhibens DSM 17395

 Score =  214 bits (545), Expect = 2e-60
 Identities = 117/254 (46%), Positives = 168/254 (66%), Gaps = 8/254 (3%)

Query: 12  MDGAAQAKAAGKTLLKVNGLKVGYGGIQAV-KGVDFEVREGELVSLIGSNGAGKTTTMKA 70
           +D A       +TLL+VN ++V Y  +  V KGV  +V +G + +L+G NGAGKTTT+KA
Sbjct: 2   LDTAKTTDVQAETLLEVNNIEVIYNHVILVLKGVSLKVPKGGITALLGGNGAGKTTTLKA 61

Query: 71  ITGTLPAGAG-----NIEFLGRSIKGRGAWDLVSEGLVMVPEGRGVFTRMTITENLQIGA 125
           ++  L +  G     +I + G  I+ R   +LV +G++ V EGR  F  +T+ ENL  GA
Sbjct: 62  VSNLLHSERGEVTKGSISYRGERIQDRDPAELVKKGVIQVMEGRHCFEHLTVEENLLTGA 121

Query: 126 YIRKD-KAEIAKDMERVFVTFPRLRERKDQLAGTMSGGEQQMLAMGRALMARPKVLLLDE 184
           Y R D  A I +D+E V+  FPRL+ER+   AG  SGGEQQM+AMGRALM+RP+ +LLDE
Sbjct: 122 YTRSDGNANIQRDLEMVYSYFPRLKERRRSQAGYTSGGEQQMVAMGRALMSRPETILLDE 181

Query: 185 PTMGLSPIMCDKIFEVVQTV-ASQGVTILLVEQNANRALQLADRGYVMESGLITMSGEAK 243
           P+MGL+P + ++IFE+V+++  ++GVT LL EQN N AL+ +  GY++ESG + M G A 
Sbjct: 182 PSMGLAPQLVEQIFEIVKSINENEGVTFLLAEQNTNVALRYSHYGYILESGRVVMDGPAA 241

Query: 244 ALLSDPRVRAAYLG 257
            L  +P V+  YLG
Sbjct: 242 ELRENPDVKEFYLG 255