Pairwise Alignments

Query, 416 a.a., DNA topoisomerase IB (poxvirus type) (EC 5.99.1.2) from Variovorax sp. SCN45

Subject, 314 a.a., Topoisomerase IB from Pseudomonas stutzeri RCH2

 Score =  282 bits (721), Expect = 1e-80
 Identities = 160/335 (47%), Positives = 206/335 (61%), Gaps = 29/335 (8%)

Query: 48  RFRYRDAKGRWLRDVDEISRIRMLAIPPAYTQVWICPLPNGHLQATGIDARGRKQYRYHA 107
           +F Y    G  +RD   I RI  L IPPAY  VWICP P GHLQATG DARGRKQYRYH+
Sbjct: 5   KFVYFGPNGERIRDDAAIQRINKLVIPPAYRDVWICPDPQGHLQATGRDARGRKQYRYHS 64

Query: 108 DWRVMKDETKFERLEAFALALPRIRARVARDLQ-PEKGQGNGQQAPGRGQVLAALVRLLD 166
            WR ++D  K++R+  F  ALP++R ++ + L  PE           R +V+A +V LL+
Sbjct: 65  RWREIRDGNKYDRMLQFGEALPKLRQKLEKHLAAPELS---------REKVMALVVTLLE 115

Query: 167 TTLLRIGNEEYASSNGSYGLTTLRNRHADVHGAALRLRFKGKSGVMHEARLDDPRVAKVV 226
           +TL+RIGN  YA  N SYGLTTLR RH D+ G ++R  F+GKSGV HE  L D R+A+++
Sbjct: 116 STLIRIGNSRYARDNRSYGLTTLRTRHVDISGTSIRFHFRGKSGVEHEVTLRDRRLARLM 175

Query: 227 RQCQQLPGQALFQYAGEDGELHSVSSTDVNDYLAEAAPGERFTAKDFRTWHGTVQALE-L 285
           R+C +LPGQ LFQY  EDG+  +VSS DVN YL E   G  FTAKD+RTW G+  ALE L
Sbjct: 176 RRCMELPGQQLFQYLDEDGQRRAVSSNDVNLYLREMT-GSDFTAKDYRTWAGSALALERL 234

Query: 286 TRLACEPGRTAADGTRYSAKDILAAVAKQLGNTPAVCKKAYVHPAVLALGSALSDDDEDA 345
            +L   P   A    + +  + +  VA QLGNTPAVC++ Y+HPA+L    A S  D   
Sbjct: 235 RKLDSAPDSVA----KQNLVETVKQVASQLGNTPAVCRQCYIHPAIL---DAFSAGD--- 284

Query: 346 ATALFEKIAGRKTARPSRGLYAAERRLLAFLRTHR 380
                  +A  + AR  + L A E  LL FL+  R
Sbjct: 285 -------LAKPRAARKRKWLSAEEVALLNFLQQQR 312