Pairwise Alignments

Query, 416 a.a., DNA topoisomerase IB (poxvirus type) (EC 5.99.1.2) from Variovorax sp. SCN45

Subject, 380 a.a., DNA topoisomerase I protein from Sinorhizobium meliloti 1021

 Score =  239 bits (609), Expect = 1e-67
 Identities = 147/363 (40%), Positives = 197/363 (54%), Gaps = 24/363 (6%)

Query: 25  PIANGLVYVNPDMPGIRRLRHGERFRYRDAKGRWLRDVDEISRIRMLAIPPAYTQVWICP 84
           P   GLVYV+   PGIRR R G+ F YR   G  + D    SRI  L +PPAY  VWIC 
Sbjct: 31  PEETGLVYVSDSEPGIRRQRRGKGFVYRMPDGSIVTDPSIKSRIAALGLPPAYDNVWICL 90

Query: 85  LPNGHLQATGIDARGRKQYRYHADWRVMKDETKFERLEAFALALPRIRARVARDLQPEKG 144
              GHLQATG DARGRKQYRYH++W+ ++   KF +L  F  ALP+IR  + R +Q   G
Sbjct: 91  EERGHLQATGYDARGRKQYRYHSEWQALRSADKFAQLVEFGKALPKIRRTIRRHMQ---G 147

Query: 145 QGNGQQAPGRGQVLAALVRLLDTTLLRIGNEEYASSNGSYGLTTLRNRHADVHGAALRLR 204
                Q      VLAALV LLD   LR GN+ Y  +NGSYG TTL  RH  +    + L+
Sbjct: 148 DVENMQT-----VLAALVALLDEAHLRTGNQAYVQANGSYGATTLLKRHLRLGDGFIELK 202

Query: 205 FKGKSGVMHEARLDDPRVAKVVRQCQQLPGQALFQYAGEDGELHSVSSTDVNDYLAEAAP 264
           F GK G   +  L  P++ +++ +   LPG+ LF +  E+  L  V S  +N YL++ A 
Sbjct: 203 FIGKGGKRVQRLLRRPKLQQLLEEIADLPGRQLFVWKDENDVLRPVDSGRLNRYLSDVA- 261

Query: 265 GERFTAKDFRTWHGTVQALELTRLACEPGRTAADGTRYSAKDILAAVAKQLGNTPAVCKK 324
           G   +AK FRTW GT+ A    R + E G         + K +  A A  L NTPA+ + 
Sbjct: 262 GTAVSAKTFRTWGGTLAAFTAARTSIEQGEWP------TIKQMSEAAASVLHNTPAISRS 315

Query: 325 AYVHPAVLALGSALSDDDEDAATALFEKIAGRKTARPSRGLYAAERRLLAFLRTHRQGQA 384
           +Y+HP VLAL        + +A+    ++  R   R    L   E+RLL+FL+   + +A
Sbjct: 316 SYIHPDVLALA-------DKSASISARQLQAR--GRLDSELRVEEQRLLSFLQRSARSRA 366

Query: 385 RAA 387
           R A
Sbjct: 367 RQA 369