Pairwise Alignments

Query, 1045 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1054 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

 Score = 1180 bits (3053), Expect = 0.0
 Identities = 602/1034 (58%), Positives = 775/1034 (74%), Gaps = 14/1034 (1%)

Query: 1    MARFFIDRPIFAWVIAIVIMLAGALSIGTLPLEQYPDIAPTKVSINATYTGASAKTIEDS 60
            M++FFIDRPIFAWVIA+VIML GALSI  LP+ QYP IAP  ++I  TY GASA+T++D+
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIQVTYPGASAQTVQDT 60

Query: 61   VTQVIEQKMKGLDRLVSMSSSSTSSGTARIELTFEAGTNADVAQMQVQNKLQQAQSQLPQ 120
            V QVIEQ++ G+D L  +SS S S G+  I  TFE GTN+D AQ+QVQNKL  A   LPQ
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120

Query: 121  SVQSQGVTVTKSGTDFLMIVSLISQDGSATATDIGDYISSSLLDVISRIDGVGDVQTLGS 180
             VQ QG+ VTKS  +FLM++ ++S+DGS T  D+ +YI S++ D ISR  GVGD Q  G+
Sbjct: 121  EVQQQGIRVTKSVRNFLMVIGVVSRDGSMTREDLSNYIVSNMQDPISRTAGVGDFQVFGA 180

Query: 181  GYAMRIWLDPAKLQKYSLMPSDVSSALTSQNTEVSAGQLGALPATAGQRLTATITARSKL 240
             YAMRIWLDPAKL  ++L P DVS+A+T+QN ++++GQLG LPA  GQ+L ATI  +++L
Sbjct: 181  QYAMRIWLDPAKLNNFNLTPVDVSTAITAQNVQIASGQLGGLPAMPGQQLNATIIGKTRL 240

Query: 241  RTADQFREVIVKSDSSSGAIVRLGDVARIELGSESYTINSHFDGHPSAGMGVKLATGANA 300
            +TA+QF+ +++K +   G+ VR+GDVA + LG E+Y+IN+ F+G P++G+ V+LATGANA
Sbjct: 241  QTAEQFKAILLKVNPD-GSQVRVGDVADVALGGENYSINAQFNGAPASGLAVRLATGANA 299

Query: 301  LTVSNAVKAKLAELSPFFPNQMKAVVGYDTTPFVRISIEEVAKTLAEAMVLVVLIMYLFL 360
            L  + A++  + +L PFFP  ++ V  YDTTP V  SI+ V +TL EA+VLV L+M+LFL
Sbjct: 300  LDTAKALRKTVDDLKPFFPQGLEVVFPYDTTPVVSESIKGVVETLVEAIVLVFLVMFLFL 359

Query: 361  QNLRATLVPAIAVPVVLLGTFGVLSLLGYSINTLTMFGMVLAIGLLVDDAIVVVENVERL 420
            QN RAT++  + VPVVLLGTFG+L+  G+SINTLTMFGMVLAIGLLVDDAIVVVENVER+
Sbjct: 360  QNFRATIITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419

Query: 421  MTEEGLSPKEATRKSMSEITGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSVTIVAAML 480
            M+EEGLSPKEAT+KSM +I GALVGIALVLSAV +PMAFFGGSTGVIY+QFS+TIV+AM 
Sbjct: 420  MSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMA 479

Query: 481  LSVLVALTLSPALCATLLKPVQAGHH-EEKRGFFGWFNRTFERNAERYRSGVGGLLHRGK 539
            LSVLVAL  +PALCAT+LKP+  G H   KRGFFGWFNRTF+R    Y  GVG +L    
Sbjct: 480  LSVLVALIFTPALCATMLKPIPKGEHGTPKRGFFGWFNRTFDRGVRSYERGVGNMLKHKA 539

Query: 540  RSLLVYALLVGVLGMTFMRLPTSFLPDEDQGTLMAQVKLPASATDEQLQQTMKSFEQYLS 599
              LL Y ++V  +   F R+PT+FLP+EDQG L AQV+ PA ++ E+ Q  +    ++L 
Sbjct: 540  PYLLAYIIIVVGMVWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDKMREFLL 599

Query: 600  SQKE-------VSHYITLTGLS---GDQATGNAFITLKDWRERGGKAQDAASLARRFTMD 649
               +       V+   T+TG +     Q++G AFI LK W ER         +A R    
Sbjct: 600  RPSKDGGEGDGVASVFTVTGFNFAGRGQSSGLAFIMLKPWEERNAD-NTVFKIAGRAQQH 658

Query: 650  MATRASNANVFVMLPPAVRGLGSNAGFDVQLQDLGGIGHEALVQAREQFLALARKDPALS 709
              T   +A VF   PPAV  LG+  GFDV LQD  GIGHE L++AR QFL +A +   L+
Sbjct: 659  FFT-FRDAMVFAFAPPAVMELGNATGFDVFLQDRAGIGHEKLMEARNQFLGMASQSKILA 717

Query: 710  QVRSNNLDDTPQFSIDIDDRKAAALNLSTSDINDTLSSAMGGSYVNDFINNGRVKKVYVQ 769
            QVR N L+D PQ+ ++IDD KA+AL ++ S+IN+TLS A+G +YVNDFI+ GRVK+VYVQ
Sbjct: 718  QVRPNGLNDEPQYQLEIDDEKASALGITLSEINNTLSIALGSNYVNDFIDRGRVKRVYVQ 777

Query: 770  ADAPFRMQPDSVDRWHVRNANSEMVPFSAFASSRWTYGSPQLSRYNGMSSFELIGDPAAG 829
                 RM P+ + +W+VRN+   MVPFSAFA   W YGSP+L+RYNG+ + E++G PA G
Sbjct: 778  GQPNSRMSPEDLKKWYVRNSAGTMVPFSAFAKGEWVYGSPKLARYNGVEAMEILGTPAPG 837

Query: 830  VSSGTAMDAVERIMKQLPQGIGYEWAGSSYQERLSGSQAPLLYAVSILFVFLCLAALYES 889
             S+G AM  VE I K+LP G+G  W G SY+ERLSGSQAP LYA+S+L VFLCLAALYES
Sbjct: 838  YSTGEAMAEVETIAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYES 897

Query: 890  WSVPFSVMLVVPLGVLGAVLATKLAGLSNDVYFQVGLLATVGLSAKNAILIVEFAKQLQD 949
            WS+P +VMLVVPLG++GA++AT L GLSNDVYFQVGLL T+GL+AKNAILIVEFAK+L +
Sbjct: 898  WSIPIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHE 957

Query: 950  EGMALVEATLQAVRLRLRPILMTSLAFMFGVLPLALSTGAGSGSRRAIGVGVLGGIATAT 1009
            +G  L+EA ++A R+RLRPI+MTSLAF+ GV+PLA+STGAGSGS+ AIG GV+GG+ TAT
Sbjct: 958  QGRTLMEAAIEACRMRLRPIIMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMLTAT 1017

Query: 1010 VLGIFFVPLFFVAI 1023
            +L IF+VPLFFV +
Sbjct: 1018 ILAIFWVPLFFVTV 1031