Pairwise Alignments

Query, 792 a.a., VgrG protein from Variovorax sp. SCN45

Subject, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  226 bits (577), Expect = 4e-63
 Identities = 169/570 (29%), Positives = 266/570 (46%), Gaps = 63/570 (11%)

Query: 79  VRFMRAGHVG-RYFEYRIALRSWFWLLTKRINSRILQDKKVLEVLDAVFEDSPIKRFKKT 137
           VR +  G  G R+  Y + L      L+ R NSRI Q + V E++  + ++  I+ +   
Sbjct: 83  VRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPEIISILLQEMGIEDY--- 139

Query: 138 RADNVIGTHEPRRYCVQHQESDYQFLSRLLEDEGIYYWFDAHDAPGTMHLSDASDLAHDK 197
            A  +      R +CVQ++E+D QFL R+  +EG+ Y         T+  +D+SD +  K
Sbjct: 140 -AFALKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQKHTLLFTDSSD-SQPK 197

Query: 198 LPAASTLNFMPAGATEPRDNEISR-WISERQFDTGKYAS----RDSNFKSIKKKL-EATG 251
           L      N +  G       EI+  ++ + QF T    S    +D +FK       + T 
Sbjct: 198 LAKPVPYNALAGG-------EINLPYVVDLQFKTTAQVSHTELKDYSFKKPAYGFTQRTQ 250

Query: 252 GEPDKCELSEFEAFEFAGGYFSGGDADDKGKLRGEEIGARRQRHFALTRWPDVAAGRSFT 311
           G+    +   +E F+  G Y    +     ++R E +        A +  P + AG  F 
Sbjct: 251 GKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLLLAGVRFD 310

Query: 312 FKGDPDAARDGDYVIAACTFVASHSGYEGVPEVGDPVPLDVLLREALEDDAVCADTLPVL 371
            +   D A + D+++      A+H G +                +AL+++          
Sbjct: 311 LQDHLDHAMNRDWLVVQ----ANHQGTQP---------------QALQEE---------- 341

Query: 372 RELVAQTPALRAGRNGDSAFL--LTVMPIDVPFRPPRLTPRVRMPGPQSAIVVGPDGEEI 429
                       G +G + +   L ++P  + +R  R   + ++ GP  A VVGP GEEI
Sbjct: 342 ------------GGSGATTYSNQLKLIPAHITWRA-RPCAKPQVDGPMIATVVGPQGEEI 388

Query: 430 HADDFGRVKVHFHWDRYDKSNEKSTCWVRVSQPWAGKGWGGYFIPRIGQEVIVDFLNGDP 489
           + D+FGRVKVHF WDRY  SNEKS+CWVRV+Q WAG  +G   IPR+G EVIV FLNGDP
Sbjct: 389 YCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDP 448

Query: 490 DRPLVIGRVYNDDQPIPFGSHTQSGFRTRSTPKGSAANCNEFRFEDKKGSEQVYLHAEKN 549
           D+P++ GR Y+     P+            T        NE  FED+ GSEQ+ LHA+K+
Sbjct: 449 DQPIITGRTYHATNTAPYALPDHKTKTVLRTETHQGQGYNELSFEDQAGSEQILLHAQKD 508

Query: 550 QDIEVENDETHWVGHDRKKTVDHDETVHVKHDRTETVGNNEKITIGVNRTESVGNNETIS 609
            D  +E+D T  + HD+  TVD+D    ++ ++  TV    +  I ++ +  VG +    
Sbjct: 509 WDALIEHDHTEVIRHDQHLTVDNDRFTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHK 568

Query: 610 IGVNRTETVGSNETITIGSNRTITVGASET 639
           +G       G   ++  G+   +  GA  T
Sbjct: 569 VGQRIAVEAGKEISLKSGAKIVVEAGAELT 598



 Score = 40.0 bits (92), Expect = 6e-07
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 9/111 (8%)

Query: 662 QEITVGAVQAVTVGASQTISVGANQSSSIGANRSVDVGANLTTNVGSDEARSVGKGRSTS 721
           Q +TV   +   +  +Q ++V     S I  + S +VGA+L   VG   A          
Sbjct: 525 QHLTVDNDRFTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIA--------VE 576

Query: 722 VGKDDSLSVGKNLVISAGDSISITTGSASITMKKDGTIVIKGKDITIDASG 772
            GK+ SL  G  +V+ AG  +++  G + + +   G  ++ G  I ++A G
Sbjct: 577 AGKEISLKSGAKIVVEAGAELTLKAGGSFVKVDAGGVHLV-GPAINLNAGG 626