Pairwise Alignments

Query, 370 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

 Score = 69.3 bits (168), Expect = 5e-16
 Identities = 69/300 (23%), Positives = 115/300 (38%), Gaps = 16/300 (5%)

Query: 62  LGDGMAQAQQAMKRGRSRAPVPWFLFFGDAAANLPGLLAAGHGERM---PAREADGAKAD 118
           L   M   +Q++ +      +PW+L  G   A    L+    G+         A G K++
Sbjct: 108 LNQVMLNMKQSLNKHNYLYALPWYLVLGLENAGKTSLINRS-GQNFVFSSVMRASGQKSE 166

Query: 119 A--CWHWWLTAATVAIEVPPDAVGDAAGTPAQ-------RGLWLQSLLALAERRHRLPLN 169
               + WW+   +V I+  PD      G  ++       R LWL  +  L   R R PLN
Sbjct: 167 NPYSFDWWIGDESVLID--PDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLN 224

Query: 170 GMVACVAARDLLHADESDLAALAARMRRLLDETSDTLRLQMPAYLVVTGLEQLPGYAVLH 229
           G+V  +    L  A  S+  A A  +R  L E  +TL  ++P Y+ +T L+ L G+    
Sbjct: 225 GIVLALDVAHLATATASERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFF 284

Query: 230 RALPPEALSQAVGHRLTDPSPVIATPAAERLDAVFDPLAQHLHALRMSLLREQAGAADRL 289
           +        + +G   +  S        E   + +      ++ +    +       +R 
Sbjct: 285 KHYTKSQREEVLGFTFSMDSVDNLDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERN 344

Query: 290 AVHEFVEAVRALQPGLRTFAQVLFENHGKGTRAPRWRGLYLTAAASNGAPAAFVDDLFGR 349
           A++ F   +  L+  L+ F Q    +    T A   RG Y T+    G P    DD   R
Sbjct: 345 AIYSFTRQISGLKEILQQFFQEALASDQFSTSA-LVRGAYFTSVYQQGVPTNAFDDAASR 403