Pairwise Alignments

Query, 1374 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Variovorax sp. SCN45

Subject, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

 Score = 1700 bits (4403), Expect = 0.0
 Identities = 856/1368 (62%), Positives = 1071/1368 (78%), Gaps = 33/1368 (2%)

Query: 7    YSYTERKRIRKSFGNRDSVVEIPYLLQMQKDAYTAFLQAGIPPKQRTVEGLQAAFDAAFP 66
            YSYTE+KRIRK FG R  V++IPYLL +Q D++  F++   P  Q    GL+AAF + FP
Sbjct: 3    YSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD-PEGQY---GLEAAFRSVFP 58

Query: 67   IVSHNGFVEMKFLEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKVVK 126
            I S+NG  E++++ Y L +P FDV+ECQ RG+T++  +R K++L+I+D+++       VK
Sbjct: 59   IQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG---TVK 115

Query: 127  EVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 186
            ++KEQEVYMGE+PLMT+ G+F+INGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++AR
Sbjct: 116  DIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175

Query: 187  VIPYRGSWLDFEFDPKDMLYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRLMDS 246
            +IPYRGSWLDFEFDPKD LY R+DRRRK+P +I+L+A+G     IL  FF   NF + D 
Sbjct: 176  IIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQ 235

Query: 247  GAQMEFVSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQGGTTHISVPEDFLVG 306
               ME V ERLRGE A FDI +  GKV V K +RVTARH R+LE+ G   I VP +++VG
Sbjct: 236  TLMMELVPERLRGETATFDI-EADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVG 294

Query: 307  RVIARNIVDADSGEILAKANDELTEALLKKLRTAGVQDVQVIYTNELDQGAYISQTLRID 366
            +V A++ V+  +GE++  AN E++   L  L  AG + ++V++TN+LD G ++S+TLR+D
Sbjct: 295  KVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVD 354

Query: 367  ETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKVGRDES 426
             T D  +A V IYRMMRPGEPPT++A ++LF+ LF++ + YDLS VGRMKFN+ +GR+++
Sbjct: 355  STTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDA 414

Query: 427  TGPMVLTNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLARIEKA 486
                 L   DI+ V+K L+ +RNG GEVDDIDHLGNRR+R VGE+AENQ+R GL R+E+A
Sbjct: 415  EEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474

Query: 487  VKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALG 546
            VKERL   + + +MP DLIN+KPISAA+KEFFG+SQLSQFMDQ NPLSE+THKRR+SALG
Sbjct: 475  VKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALG 534

Query: 547  PGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRRV 606
            PGGLTRERAGFEVRDVHVTHYGR+CPIETPEGPNIGLINSL+ +AR NEYGF+ETPYRRV
Sbjct: 535  PGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRV 594

Query: 607  VDSKVTNEIDYLSAIEEGKYVIAQANAALDKDGVLTGDLVSAREAGESILVGAERIQYMD 666
            V+  VT+E+DYLSAIEEG++VIAQANA L ++G    +LV+AR+ GES L   E + YMD
Sbjct: 595  VNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMD 654

Query: 667  VSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPMVGTGIERVSAVDSGT 726
            V+  Q+VS+AASL+PFLEHDDANRALMGANMQRQAVP LR EKP+VGTGIER  AVDSG 
Sbjct: 655  VATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGV 714

Query: 727  VVTATRGGIVDYVDATRVVVRVNDAEAAAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKRG 786
               A RGG++  VDA+R+VV+VN+ E   GE G+DIYNL KY RSNQNT I+QRP V  G
Sbjct: 715  TAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPG 774

Query: 787  DKIAKGDVVADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIE 846
            + +A+GDV+ADG STDLGELALGQNM IAFMPWNGYNFEDSIL+SERVV +DR+T+IHI+
Sbjct: 775  EPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQ 834

Query: 847  ELVVMARDTKLGAEEITRDIPNLAEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGETT 906
            EL  +ARDTKLGAEEIT DIPN+ E  L++LDESGI+Y+GAEV+ GD LVGKVTPKGET 
Sbjct: 835  ELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQ 894

Query: 907  LTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGITRDKRAQQIIDDELK 966
            LTPEEKLLRAIFGEKASDVKDTSLRV     GTVIDVQVFTR+G+ +DKRA +I   +LK
Sbjct: 895  LTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLK 954

Query: 967  RFRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPNKLAKGTKLDKAYLSSVEKFHWFDIR 1026
              + DL ++ +I+E     R+  +L           LA G    +A L S+E+  W +  
Sbjct: 955  EAKKDLTEEFQILEGGLLARVRSVL-----------LAGG--YTEAKLGSIERKKWLEQT 1001

Query: 1027 PAEDEVATQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQ 1086
               +E+  QLE +    ++ +  FD  FE KR+K+TQGD+L  GVLK+VKVYLAVKRR+Q
Sbjct: 1002 LENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061

Query: 1087 PGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPCDICLNPLGVPSRMNVGQVLEVHLGWAG 1146
            PGDKMAGRHGNKGV+SKI PVEDMP+  +G P DI LNPLGVPSRMN+GQ+LEVHLG A 
Sbjct: 1062 PGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAA 1121

Query: 1147 KGIGQRIGDLLQQEAKVAELRKFMEQLYN-GSGRPE-ELEQLSDTELLAMAANLQSGATF 1204
            KGIG +I  +++++ ++A+LR+F++++Y+ G  R   ++ +LSD ++  +A NL++G   
Sbjct: 1122 KGIGDKINQMIKEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPV 1181

Query: 1205 ATPVFDGASEEEIRGMLKLAYPDDIAKLKGLTETRTQAYLFDGRTGDQFERPVTVGYMHF 1264
            ATPVFDGA E  I+ ML+LA   D+     LT       LFDGRTGD FERPVTVGYM+ 
Sbjct: 1182 ATPVFDGAPESSIKAMLELA---DLPASGQLT-------LFDGRTGDAFERPVTVGYMYM 1231

Query: 1265 LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLT 1324
            LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQEMLT
Sbjct: 1232 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1291

Query: 1325 VKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGLDIELE 1372
            VKSDDV GRTK+Y++IV G H++E GMPESFNVL+KEIRSLG++IELE
Sbjct: 1292 VKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELE 1339