Pairwise Alignments

Query, 1374 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Variovorax sp. SCN45

Subject, 1393 a.a., DNA-directed RNA polymerase, beta subunit (NCBI) from Rhodospirillum rubrum S1H

 Score = 1582 bits (4096), Expect = 0.0
 Identities = 802/1400 (57%), Positives = 1040/1400 (74%), Gaps = 45/1400 (3%)

Query: 8    SYTERKRIRKSFGNRDSVVEIPYLLQMQKDAYTAFLQAGIPPKQRTVEGLQAAFDAAFPI 67
            S T RKRIRK FG   +V  +P L+++QK +Y  FLQ G+P  +RT  GLQ  F + FPI
Sbjct: 4    SLTSRKRIRKDFGRIPTVAPMPNLIEVQKSSYDQFLQIGVPVDKRTDSGLQEVFKSVFPI 63

Query: 68   VSHNGFVEMKFLEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKVVKE 127
               +G  E++F+ Y L +P +D  ECQ RG+TFA+ ++  ++L+++D +  T  ++ +++
Sbjct: 64   RDFSGKGELEFVAYELEEPKYDTDECQQRGMTFAAPLKVTLRLLVWDVDEETG-ARSIRD 122

Query: 128  VKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARV 187
            +KEQ+VYMG++PLMT  G+FIINGTERVIVSQ+HRSPGVFF+HDKGKTHSSGK LF+ARV
Sbjct: 123  IKEQDVYMGDMPLMTSNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAARV 182

Query: 188  IPYRGSWLDFEFDPKDMLYFRVDRRRKMPVTILLKAI----------------------- 224
            IPYRGSWLDFEFD KDM+Y R+DRRRK+PVT LL A+                       
Sbjct: 183  IPYRGSWLDFEFDAKDMVYVRIDRRRKLPVTTLLYALEGAAATALREARTAEGRSVDPSE 242

Query: 225  --GLNPESILANFFVNDNFRLMDSGAQMEFVSERLRGEVARFDITDKS-GKVVVAKDKRV 281
              G+  E IL  F+   +++  D G +++F  + LRG    FD+ D + G+V +    +V
Sbjct: 243  IAGMTSEEILDFFYQKLSYKRDDKGWKVDFKPDHLRGVKLMFDLVDAATGEVKIEAGTKV 302

Query: 282  TARHTRELEQGGTTHISVPEDFLVGRVIARNIVDADSGEILAKANDELTEALLKKLRTAG 341
            T R  R+L + G T + V  + LVGR  A ++++  SGEI A+A +ELTEA+L  +  AG
Sbjct: 303  TPRAARKLAEDGMTEMRVFTEELVGRYAAEDMINEASGEIYAEAGEELTEAMLADMEKAG 362

Query: 342  VQDVQVIYTNELDQGAYISQTLRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLF 401
              +++V++ + ++ G Y+  TL +D+      A + IYR+MRPGEPPT +   ALF+ LF
Sbjct: 363  FTELRVLHIDHVNVGPYVRNTLAMDKNTTREEALIDIYRVMRPGEPPTLETADALFKGLF 422

Query: 402  YNPDTYDLSRVGRMKFNAKVGRDESTGP---MVLTNEDILAVVKILVDLRNGNGEVDDID 458
            ++ + YDLS VGR+K NA++G      P    VL  ED+L +++ LV+L++G GE+DDID
Sbjct: 423  FDSERYDLSAVGRVKMNARLGFTMQEAPDTMRVLRKEDVLHIIRQLVELKDGKGEIDDID 482

Query: 459  HLGNRRVRCVGELAENQYRTGLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFF 518
            HLGNRRVR VGEL ENQYR GL R+E+A++ER+   + + +MPHDLIN+KP +AA++EFF
Sbjct: 483  HLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDTVMPHDLINAKPAAAAVREFF 542

Query: 519  GASQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEG 578
            G+SQLSQFMDQTNPLSEITHKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEG
Sbjct: 543  GSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEG 602

Query: 579  PNIGLINSLALYARLNEYGFIETPYRRVVDSKVTNEIDYLSAIEEGKYVIAQANAALDKD 638
            PNIGLINSLA +AR+N+YGFIE+PYR+VV+  VT+E+ Y+SA+EEGKYVIAQANAAL +D
Sbjct: 603  PNIGLINSLATFARVNQYGFIESPYRKVVEGTVTDEVTYMSAMEEGKYVIAQANAALTED 662

Query: 639  GVLTGDLVSAREAGESILVGAERIQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMQ 698
            G    DL+S R+A +  +V  + I Y+DVSP Q+VSVAA+L+PFLE+DDANRALMG+NMQ
Sbjct: 663  GHFADDLISCRKASDFEMVQPQDIDYIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQ 722

Query: 699  RQAVPVLRPEKPMVGTGIERVSAVDSGTVVTATRGGIVDYVDATRVVVRVNDAEAAAGEV 758
            RQAVP+++ E P VGTG+E   A DSG  + A R G+V  VDATR+V+R  + +    E 
Sbjct: 723  RQAVPLVKAEAPYVGTGMEAAVARDSGATIAAKRAGVVQQVDATRIVIRATE-DLKIAES 781

Query: 759  GVDIYNLIKYQRSNQNTNIHQRPIVKRGDKIAKGDVVADGASTDLGELALGQNMLIAFMP 818
            GVDIY L K+QRSNQ+T I+QRP+VK GD + +G+++ADG  T++GELALG+N+L+AFMP
Sbjct: 782  GVDIYRLQKFQRSNQSTCINQRPLVKVGDLVGRGEILADGPLTEMGELALGRNVLVAFMP 841

Query: 819  WNGYNFEDSILISERVVAEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLAEQQLNRLD 878
            WNGYNFEDSILISER+V++D +TSIHIEE  VMARDTKLG EEITRDIPN+ E+ L  LD
Sbjct: 842  WNGYNFEDSILISERIVSDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNLD 901

Query: 879  ESGIIYVGAEVQPGDTLVGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQG 938
            E+GI+Y+GAEVQ GD LVGKVTPKGE+ +TPEEKLLRAIFGEKASDV+DTSLR+  G  G
Sbjct: 902  EAGIVYIGAEVQAGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRIPPGVTG 961

Query: 939  TVIDVQVFTREGITRDKRAQQIIDDELKRFRLDLNDQLRIVEADAFDRIEKLLTGKVANG 998
            TV++V+VF R G+ +D+RA  I   E++    D +D+  I+E     R+++LL G+   G
Sbjct: 962  TVVEVRVFNRRGVEKDERALAIERQEIESLAKDRDDERAILEGSFARRLKELLIGQKVVG 1021

Query: 999  GPNKLAKGTKLDKAYLSSVEKFHWFDIRPAEDEVATQLESIKNSLEQTRHSFDLAFEEKR 1058
            GP  +A G  + +  LS      W  I    DE AT++E +K + E++       FE K 
Sbjct: 1022 GPRGMATGGVISEDLLSGYTAAQWRQIAVENDETATEIEGLKKAYEESIAKIQERFENKV 1081

Query: 1059 KKLTQGDELPAGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTP 1118
            +KL +GDELP GVLKMVKV++AVKR+LQPGDKMAGRHGNKGV+SKI P+EDMP++ DGT 
Sbjct: 1082 EKLQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLEDGTY 1141

Query: 1119 CDICLNPLGVPSRMNVGQVLEVHLGWAGKGIGQRIGDLLQQEAK----VAELRKFMEQLY 1174
             DI LNPLGVPSRMNVGQ+LE HLGWA +G+G +IG LL+Q  +    + +LR+ ++ +Y
Sbjct: 1142 VDIVLNPLGVPSRMNVGQILETHLGWACRGLGAQIGALLEQVKRGLIPINDLREKLDDVY 1201

Query: 1175 NGSGRPEELEQLSDTELLAMAANLQSGATFATPVFDGASEEEIRGMLKLAYPDDIAKLKG 1234
                  E+L  + D ++  +A NL+SG   ATPVFDGA E +I  ML+ A         G
Sbjct: 1202 GPRHAKEDLAPMGDDQIKELAFNLRSGVPIATPVFDGARESDIVDMLRKA---------G 1252

Query: 1235 LTETRTQAYLFDGRTGDQFERPVTVGYMHFLKLHHLVDDKMHARSTGPYSLVTQQPLGGK 1294
            L ++  Q  L DGRTG+ F+R VTVGY++ LKLHHLVDDK+HARS GPYSLVTQQPLGGK
Sbjct: 1253 L-DSSGQVTLSDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGK 1311

Query: 1295 AQFGGQRFGEMEVWALEAYGAAYVLQEMLTVKSDDVQGRTKVYESIVKGEHSIEAGMPES 1354
            AQFGGQRFGEMEVWALEAYGAAY LQEMLTVKSDDV GRTKVYE+IVKG+ + EAG+PES
Sbjct: 1312 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVKGDDTFEAGIPES 1371

Query: 1355 FNVLVKEIRSLGLDIELERS 1374
            FNVLVKE+RSLGLD+EL +S
Sbjct: 1372 FNVLVKEMRSLGLDVELGQS 1391