Pairwise Alignments
Query, 1374 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Variovorax sp. SCN45
Subject, 1427 a.a., DNA-directed RNA polymerase, beta subunit from Dechlorosoma suillum PS
Score = 1465 bits (3792), Expect = 0.0
Identities = 734/944 (77%), Positives = 819/944 (86%), Gaps = 10/944 (1%)
Query: 430 MVLTNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLARIEKAVKE 489
+ L+ DI+ +K+LV+LRNG GE+DDIDHLGNRRVR VGELAENQ+R GL R+E+AVKE
Sbjct: 493 LTLSPRDIVESIKLLVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLVRVERAVKE 552
Query: 490 RLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALGPGG 549
RL QAE + LMPHDLIN+KPISAA+KEFFG+SQLSQFMDQTNPLSEITHKRRVSALGPGG
Sbjct: 553 RLSQAESDNLMPHDLINAKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGG 612
Query: 550 LTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRRVVDS 609
LTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSLAL+AR N YGF+ETPYR+VVD
Sbjct: 613 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARTNSYGFLETPYRKVVDG 672
Query: 610 KVTNEIDYLSAIEEGKYVIAQANAALDKDGVLTGDLVSAREAGESILVGAERIQYMDVSP 669
KVT++I+YLSAIEEG YV+AQANAAL DG L +LV+ RE GE+IL R+QYMDV+P
Sbjct: 673 KVTDQIEYLSAIEEGAYVVAQANAALGADGTLVDELVTCREKGETILAEPSRVQYMDVAP 732
Query: 670 AQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPMVGTGIERVSAVDSGTVVT 729
QIVSVAASL+PFLEHDDANRALMGANMQRQAVP LRPEKP+VGTGIER AVDSGT V
Sbjct: 733 GQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGTAVQ 792
Query: 730 ATRGGIVDYVDATRVVVRVNDAEAAAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKRGDKI 789
A RGG+VDYVDA+RVVVRV+D E GEVGVDIYNL KY RSNQNTNI+QRP+VK GD I
Sbjct: 793 ALRGGVVDYVDASRVVVRVHDDETVPGEVGVDIYNLTKYTRSNQNTNINQRPLVKMGDII 852
Query: 790 AKGDVVADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELV 849
AKGDVVADGASTD GELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEEL
Sbjct: 853 AKGDVVADGASTDKGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELT 912
Query: 850 VMARDTKLGAEEITRDIPNLAEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGETTLTP 909
V+ARDTKLG EEITRDI +L E QL+RLDESG++Y+GAEV+ GD LVGKVTPKGET LTP
Sbjct: 913 VVARDTKLGPEEITRDIASLGEVQLSRLDESGVVYIGAEVEAGDVLVGKVTPKGETQLTP 972
Query: 910 EEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGITRDKRAQQIIDDELKRFR 969
EEKLLRAIFGEKASDVKDTSLRV G GTVIDVQVFTREGI RDKRAQ IIDD L+ ++
Sbjct: 973 EEKLLRAIFGEKASDVKDTSLRVPSGIAGTVIDVQVFTREGIERDKRAQSIIDDHLRGYK 1032
Query: 970 LDLNDQLRIVEADAFDRIEKLLTGKVANGGPNKLAKGTKLDKAYLSSVEKFHWFDIRPAE 1029
DL DQ+RIVE D F R+ +L+TGK ANGGP KLAKGT + + YL ++ +WFD+R A+
Sbjct: 1033 QDLADQMRIVERDTFARVGRLITGKPANGGPKKLAKGTVVTQEYLDGIDPHNWFDVRMAD 1092
Query: 1030 DEVATQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQPGD 1089
+EVA QLE +K SLEQTR FD+AFEEKRKKLTQGDELP GV KMVKVY+AVKRRLQPGD
Sbjct: 1093 EEVAQQLEQLKESLEQTRKDFDIAFEEKRKKLTQGDELPPGVQKMVKVYVAVKRRLQPGD 1152
Query: 1090 KMAGRHGNKGVVSKIVPVEDMPHMADGTPCDICLNPLGVPSRMNVGQVLEVHLGWAGKGI 1149
KMAGRHGNKGVVS+IVPVEDMP+MADG P DI LNPLGVPSRMNVGQ+LEVHLGWA KG+
Sbjct: 1153 KMAGRHGNKGVVSRIVPVEDMPYMADGRPVDIVLNPLGVPSRMNVGQILEVHLGWAAKGL 1212
Query: 1150 GQRIGDLLQQEAKVAELRKFMEQLYNGSGRPEELEQLSDTELLAMAANLQSGATFATPVF 1209
G +IGD+LQ AK AE+RKF+E++YN G+ E L +L+D E++ +A NL +G FATPVF
Sbjct: 1213 GYKIGDMLQAGAKAAEVRKFLEEIYNSEGKKENLNELNDQEIMELAGNLTTGVPFATPVF 1272
Query: 1210 DGASEEEIRGMLKLAYPDDIAKLKGLTETRTQAYLFDGRTGDQFERPVTVGYMHFLKLHH 1269
DGA E EI+ ML+LA G+ E+ Q L DGRTGD FER VTVGYMH+LKLHH
Sbjct: 1273 DGADEAEIKAMLRLA---------GMPES-GQITLHDGRTGDAFERQVTVGYMHYLKLHH 1322
Query: 1270 LVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLTVKSDD 1329
LVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+YVLQEMLTVKSDD
Sbjct: 1323 LVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDD 1382
Query: 1330 VQGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGLDIELER 1373
V GRTKVYE+IVKGEH I+AGMPESFNVLVKEIRSL +DI+LER
Sbjct: 1383 VNGRTKVYENIVKGEHKIDAGMPESFNVLVKEIRSLAIDIDLER 1426
Score = 603 bits (1555), Expect = e-176
Identities = 425/1053 (40%), Positives = 566/1053 (53%), Gaps = 123/1053 (11%)
Query: 7 YSYTERKRIRKSFGNRDSVVEIPYLLQMQKDAYTAFLQAGIPPKQRTVEGLQAAFDAAFP 66
YSYTE+KRIRKSF R SV+++P+LL Q ++YTAFLQA +P +R +GLQAAF + FP
Sbjct: 3 YSYTEKKRIRKSFAKRASVLDVPFLLATQLESYTAFLQAELPTAKRRNQGLQAAFGSIFP 62
Query: 67 IVSHNGFVEMKFLEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKVVK 126
IVSH+G ++F+ Y LA+PAFDV+ECQ RGLTFASA+RAKV+L+I DRE+ + VK
Sbjct: 63 IVSHSGNARLEFVSYQLAEPAFDVKECQQRGLTFASALRAKVRLVIMDREAPDT----VK 118
Query: 127 EVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 186
EVKEQEVYMGE+PLMT GSF+INGTERVIVSQLHRSPGVFFEHD+GKTHSSGKLLFSAR
Sbjct: 119 EVKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR 178
Query: 187 VIPYRGSWLDFEFDPKDMLYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRLMDS 246
VIPYRGSWLDFEFDPKD+L+FRVDRRRKMPVT LLKAIGL E ILA FF D+F+L+ +
Sbjct: 179 VIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTTLLKAIGLTNEQILAGFFEFDDFKLLKN 238
Query: 247 GAQMEFVSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQGGTTHISVPEDFLVG 306
GA V ERLRGE ARFD DK+GKV+V KDKR+TA+H R+L+ G HI+VP+DFLVG
Sbjct: 239 GADFTLVPERLRGETARFDFCDKAGKVIVPKDKRITAKHIRDLDAAGIKHIAVPDDFLVG 298
Query: 307 RVIARNIVDADSGEILAKANDELTEALLKKLRTAGVQDVQVIYTNELDQGAYISQTLRID 366
RVI NI+D DSGE++A ANDE+TE+LL KLR AGV + Q +YTN+LD+GA+IS TLR D
Sbjct: 299 RVIGHNIIDKDSGEVIANANDEITESLLAKLREAGVAEFQTLYTNDLDRGAFISNTLRAD 358
Query: 367 ETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKVGRDES 426
+T + AARVAIYRMMRPGEPPTE+AV+ LF LFY+ D YDLS VGRMKFN ++GR +
Sbjct: 359 DTATKQAARVAIYRMMRPGEPPTEEAVEILFNGLFYSDDRYDLSGVGRMKFNRRIGRPDV 418
Query: 427 TGPMVLTN---EDILAVVKILVDLRNGN-GEVDDIDHLGNRRVRCVGELAENQYRTGLAR 482
V A+ K + + N G V +I + R E + LA
Sbjct: 419 VEYKVTIKNAPHKTEALAKAIAEFTGANQGTVQEILNELQYGSRAAAENLTEEAAHTLAA 478
Query: 483 IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITH--KR 540
KA+ + EQ L P D++ S + L+ G + +I H R
Sbjct: 479 QLKALGANVEVREQLTLSPRDIVESIKLLVELRNGRG------------EIDDIDHLGNR 526
Query: 541 RVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIE 600
RV ++G + RAG VR V R+ E+ LIN+ + A + E+
Sbjct: 527 RVRSVGELAENQFRAGL-VR-VERAVKERLSQAESDNLMPHDLINAKPISAAIKEF---- 580
Query: 601 TPYRRVVDSKVTNEIDYLSAIEEGKYVIAQANAALDKDGVLTGDLVSAREAGESILVGAE 660
+ S+ ++ + LS I + V A L ++ AG
Sbjct: 581 --FGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRE-----------RAG-------- 619
Query: 661 RIQYMDVSPAQIVSVAASLVPFLEHDDANRALMGA--------NMQRQAVPVLRPEKPMV 712
+ DV P V P + N L+ + + P + V
Sbjct: 620 -FEVRDVHPTHYGRVC----PIETPEGPNIGLINSLALFARTNSYGFLETPYRKVVDGKV 674
Query: 713 GTGIERVSAVDSGTVVTATRGGIVDYVDATRVVVRVNDAEAAAGEVGVDIYNLIKYQRSN 772
IE +SA++ G V A A AA G G + L+ +
Sbjct: 675 TDQIEYLSAIEEGAYVVA-------------------QANAALGADGTLVDELVTCREKG 715
Query: 773 QNTNIHQRPIVKRGDKIAKGDVVADGAS-------TDLGELALGQNMLIAFMPWNGYNFE 825
+ I P + +A G +V+ AS D +G NM +P
Sbjct: 716 E--TILAEPSRVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLR---P 770
Query: 826 DSILIS---ERVVAEDRYTSIH-----------IEELVVMARDTKLGAEEITRDIPNLAE 871
+ L+ ER VA D T++ +VV D + E+ DI NL +
Sbjct: 771 EKPLVGTGIERTVAVDSGTAVQALRGGVVDYVDASRVVVRVHDDETVPGEVGVDIYNLTK 830
Query: 872 ----QQLNRLDESGIIYVGAEVQPGDTLV-GKVTPKGETTLTPEEKLLRAIFGEKASDVK 926
Q +++ ++ +G + GD + G T KGE L + +L A + +
Sbjct: 831 YTRSNQNTNINQRPLVKMGDIIAKGDVVADGASTDKGELAL--GQNMLIAFMPWNGYNFE 888
Query: 927 DTSL---RVDQGSQGTVIDVQVFTREGITRDKR--AQQIIDD--ELKRFRLDLNDQLRIV 979
D+ L RV + T I ++ T + RD + ++I D L +L D+ +V
Sbjct: 889 DSILISERVVAEDRYTSIHIEELT--VVARDTKLGPEEITRDIASLGEVQLSRLDESGVV 946
Query: 980 EADAFDRIEKLLTGKVANGGPNKLAKGTKLDKA 1012
A +L GKV G +L KL +A
Sbjct: 947 YIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRA 979