Pairwise Alignments

Query, 1374 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Variovorax sp. SCN45

Subject, 1372 a.a., DNA-directed RNA polymerase, beta subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 1400 bits (3623), Expect = 0.0
 Identities = 732/1372 (53%), Positives = 954/1372 (69%), Gaps = 30/1372 (2%)

Query: 14   RIRKSFGNRDSVVEIPYLLQMQKDAYTAFLQAGIPPKQRTVEGLQAAFDAAFPIVSHNGF 73
            ++ K FG  D  + IP+LL +Q D+Y  FLQ G   ++R  EGL+  F + FPI   N  
Sbjct: 3    QLTKKFGKIDVSLPIPHLLNLQVDSYVKFLQEGAT-ERRHDEGLEGVFRSVFPIEDFNRT 61

Query: 74   VEMKFLEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKVVKEVKEQEV 133
              ++F+ Y + +P +D  EC ++GLT+ + +R KV+L++YD +   S ++ ++++KEQE+
Sbjct: 62   ASLEFVSYEVGEPKYDQPECISKGLTYEAPIRIKVRLVVYDVDED-SGNRTIRDIKEQEI 120

Query: 134  YMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARVIPYRGS 193
            Y G +PLMT+KG+FIINGTERVIV+QL RSPG+ FEHD GKTHSS K+L+S R+IP RGS
Sbjct: 121  YFGTLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKTHSSRKVLYSCRIIPMRGS 180

Query: 194  WLDFEFDPKDMLYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRLMDSGAQM-EF 252
            WLDF+FD KD+LY R+DRRRKMP TIL KA+G++   IL  F+  + +RL   G  M E 
Sbjct: 181  WLDFDFDHKDILYVRIDRRRKMPATILFKAMGMSKTDILDYFYKKEFYRLDPMGRLMWEV 240

Query: 253  VSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQGGTTHISVPEDFLVGRVIARN 312
              +  R + A  DI D  G  +V   K +T R  R + + G   I V  D + G  +A +
Sbjct: 241  QKDMYRKDSAFVDIEDGKGGTIVKAGKPITKRAWRLISEAGLETIEVAPDTIEGMFLAED 300

Query: 313  IVDADSGEILAKANDELTEALLKKLRTAGVQDVQVIYTNELDQGAYISQTLRIDETVDEF 372
            IV+  +GE+LA+A DE+T +L++ LR AG+  + V++T  L+  + +  TL +D+T D  
Sbjct: 301  IVNPATGEVLAEAADEITASLVENLREAGISRLPVLHTKGLETSSSLRDTLVLDKTPDME 360

Query: 373  AARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKVGRDESTGPMVL 432
            AA+V IYR +RP  PPT +   + F  LF + D YDLS VGR K N ++G D+S     L
Sbjct: 361  AAQVEIYRRLRPSSPPTPEIAASFFDNLFRSADYYDLSPVGRYKLNQRLGIDQSVDLRTL 420

Query: 433  TNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLARIEKAVKERLG 492
            T++DIL  +++L+ L++ +G  DDIDHLGNRRVR VGEL ENQYR GL R+E+A+KER+ 
Sbjct: 421  TDDDILRAIRVLLHLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMS 480

Query: 493  QAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALGPGGLTR 552
              E   LMPHDLIN KP++A LKEFFG SQLSQFMDQTN LSE+THKRR+SALGPGGLTR
Sbjct: 481  LQEVSTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNALSEVTHKRRLSALGPGGLTR 540

Query: 553  ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRRVVDSKVT 612
            ERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SL  YA++N++GFIETPYR + +  +T
Sbjct: 541  ERAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYAKVNDFGFIETPYRIIREGALT 600

Query: 613  NEIDYLSAIEEGKYVIAQANAALDKDGVLTGDLVSAREAGESILVGAERIQYMDVSPAQI 672
            +EI +L A  E   V+AQANAA+D DG L  + V+AR  G+ ++   + +  MD+SP+Q+
Sbjct: 601  DEIKFLDASREQGEVVAQANAAVDADGKLADEYVTARVRGDVLMSHRDEVTLMDISPSQM 660

Query: 673  VSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPMVGTGIERVSAVDSGTVVTATR 732
            VS++A+L+PFLEHDDANRALMG+NMQRQAVP+LR EKP+VGTG+E   A DSG  + A  
Sbjct: 661  VSISAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPIVGTGMEGDVARDSGACILAEG 720

Query: 733  GGIVDYVDATRVVVRVNDAEAAAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKRGDKIAKG 792
             GIV Y DATR++V   +        GV  Y+L KY +SNQN+   QRP    G  + KG
Sbjct: 721  PGIVRYADATRIIVSYENG-LYPDRGGVRAYDLQKYHKSNQNSCFGQRPTCHPGQIVKKG 779

Query: 793  DVVADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELVVMA 852
            DV+ADG   + GELALG+N+++AFMPW GYNFEDSILISERVV ED +TSIHIEE  V+A
Sbjct: 780  DVLADGPGIEDGELALGKNLVVAFMPWCGYNFEDSILISERVVKEDVFTSIHIEEFEVVA 839

Query: 853  RDTKLGAEEITRDIPNLAEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGETTLTPEEK 912
            RDTKLG EEITRDIPN+ E  L  LD SGII +GA V+P D LVGK+TPKGET LTPEEK
Sbjct: 840  RDTKLGPEEITRDIPNVGEDMLRNLDGSGIIRIGASVKPDDILVGKITPKGETQLTPEEK 899

Query: 913  LLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGITRDKRAQQIIDDELKRFRLDL 972
            LLRAIFG+KA DVK+TSL+V  G +GT+IDV+VF R    +D+R + I D E  R     
Sbjct: 900  LLRAIFGDKARDVKNTSLKVPPGIEGTIIDVKVFNRRSGEKDERTRNIEDYETARIDKKE 959

Query: 973  NDQLRIVEADAFDRIEKLLTGK-VANGGPNKLAKGTKLDKAYLSSVEKF----------H 1021
             D +R +     DR+   L GK +A   P K  KG  L +A      +            
Sbjct: 960  QDHVRALGDALRDRLADTLVGKQIAVTLPGK-RKGEVLAEAGAPMTRELLDALPVKRLAG 1018

Query: 1022 WFDIRPAEDEVATQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAV 1081
             F  R  ++ V T LE     +   +  +D     KR+K+T+GD+LP GV+KMVKV++AV
Sbjct: 1019 LFKSREVDEMVDTALEDYDRQVAFLKGIYD----SKREKVTEGDDLPPGVIKMVKVHIAV 1074

Query: 1082 KRRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPCDICLNPLGVPSRMNVGQVLEVH 1141
            KR+L  GDKMAGRHGNKGVVS I+P EDMP  ADG P DI LNPLGVPSRMN+GQ++E H
Sbjct: 1075 KRKLNVGDKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETH 1134

Query: 1142 LGWAGKGIGQRIGDLLQQEAKVAELRKFMEQLYNGSGRPEELEQLSDTELLAMAANLQSG 1201
            LGW  K +G+++ ++L   A +A LR  ++ ++  +   + ++++ D       + L++G
Sbjct: 1135 LGWGAKELGRQLAEMLDSGAAMATLRHEVKDVFRSATIAKLVDEMDDETFRKAVSKLRTG 1194

Query: 1202 ATFATPVFDGASEEEIRGMLKLAYPDDIAKLKGLTETRTQAYLFDGRTGDQFERPVTVGY 1261
                TPVFDGASEE+I   ++ A  D   K            L+DGRTGD+F   VT G 
Sbjct: 1195 IVTKTPVFDGASEEDIWSWIERAGMDGDGK----------TVLYDGRTGDKFYNRVTTGV 1244

Query: 1262 MHFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQE 1321
            M+ LKLHHLVD+K+HARSTGPYSLVTQQPLGGKAQFGGQR GEMEVWALEAYGA+Y+LQE
Sbjct: 1245 MYILKLHHLVDEKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASYLLQE 1304

Query: 1322 MLTVKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGLDIELER 1373
             LTVKSDDV GR K+YE IVKG++ +EAG+PESFNVLVKE+ SLGL++ L +
Sbjct: 1305 FLTVKSDDVTGRVKMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQ 1356