Pairwise Alignments

Query, 1411 a.a., DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) from Variovorax sp. SCN45

Subject, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

 Score = 1797 bits (4655), Expect = 0.0
 Identities = 905/1378 (65%), Positives = 1107/1378 (80%), Gaps = 5/1378 (0%)

Query: 1    MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60
            MK LL+  K     E FDAIKIG+ASP+ IRSWSFGEVKKPETINYRTFKPERDGLFCA+
Sbjct: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL 120
            IFGP+KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRR+RMGHI+LA+P AHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120

Query: 121  PSRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEYGDEFIAKM 180
            PSR+GL++DM LRDIERVLYFE YV+T+PGMT L++  +++E++Y  + +E+GDEF AKM
Sbjct: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180

Query: 181  GAEGIKDLLEGIELDSEIERLRGDL--TGSEVKVKKNSKRLKVLEAFRKSGIKPEWMVLD 238
            GAE IKDLL  ++L +E E++R +L  T SE K KK +KRLK++EAF  SG KPEWM+L 
Sbjct: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240

Query: 239  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQ 298
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN+RL+RLLEL AP+II RNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300

Query: 299  EAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPT 358
            E+VD+LLDNGRRG+A+TG+NKR LKSLADMIKGK GRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 359  LKLHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHP 418
            L+LHQCGLPK MALELFKPFI+S+LE  G+ATTIKAAKK VE    VVWDIL+EVI+EHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 419  VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEA 478
            V+LNRAPTLHRLGIQAFEP+LIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL++EAQ+EA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 479  RTLMLASNNVLFPASGEPSIVPSQDVVLGLYYTTRDRINGKGEGLIFSDIGEVQRALDAN 538
            RTLM+++NN+L PASG+P IVPSQDVVLGLYY TR++IN KGEG+  +   E ++A    
Sbjct: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540

Query: 539  EVELTARVAVRITEYTKNKETGEFTPSTSLVDTTVGRALLSEILPKGLPFSNINKALKKK 598
              EL ARV VRITE  K+ E G+ T  T ++DTTVGRA+L +I+PKGLP+S +N+ L KK
Sbjct: 541  TAELHARVKVRITETIKH-ENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKK 599

Query: 599  EISKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEKHGIIDRSAK 658
            +IS L+N ++RK GLK+TV+FAD+++  GF  A  +G+S+ IDDM+VPA K+  I  + +
Sbjct: 600  QISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEE 659

Query: 659  EVKEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAKLSKQKVIDRHGKEVEQESF 718
            EV+EI++Q+ SGLVT+GERYNKV+DIW    D V+K MM  LS ++VI+R G++ +QESF
Sbjct: 660  EVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESF 719

Query: 719  NSIYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGA 778
            NSIYMMADSGARGSAAQIRQ+AGMRGLMA+PDGSIIETPITANF+EGLNVL+YFISTHGA
Sbjct: 720  NSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGA 779

Query: 779  RKGLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHGGYLMRAIVEGGEVIESLRDRI 838
            RKGLADTALKTANSGYLTRRLVDV QD+VVTE DCGT  G +M   +EGG+V  +L +  
Sbjct: 780  RKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELA 839

Query: 839  LGRSAADDVLHPENRSVLLKAGEMFDEDNIEALEAQGVDEVKVRTALTCETRFGICATCY 898
            LGR  ++D+L P    VL+    + DE   + +    VD++KVR+ +TC++ FG CA CY
Sbjct: 840  LGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCY 899

Query: 899  GRDLGRGGLINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGSIG 958
            GRDL RG L+N GEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS AA  +S++AK+NGS+ 
Sbjct: 900  GRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVK 959

Query: 959  FNATMRYVTNSKGELVVISRSGEIVIHDEHGRERERHKVPYGATLTVKADQQIKAGHVLA 1018
             +   ++VTN  G+LV+ SR+ E+ I DE GR +E+HK+PYG+ L+      + AG  +A
Sbjct: 960  LH-NAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVA 1018

Query: 1019 NWDPLTRPIITEFAGKTQFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAA-KVVRPQV 1077
            NW+  T PIITE AG+ QF ++ +G+TV++Q D++TGLS+  V +   R AA K +RP +
Sbjct: 1019 NWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAI 1078

Query: 1078 KLIDAQGQEVKIPGTDHSVTIGFPIGALVQIRDGQDVGPGEVLARIPVEGQKTRDITGGL 1137
            KL+DA G++V IPGTD       P  A+V + DG +V  G+ LARIP +    +DITGGL
Sbjct: 1079 KLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGL 1138

Query: 1138 PRVAELFEARSPKDKGMLAEMTGTVSFGKETKGKIRLQITDPEGTVWEDLVPKEKNILVH 1197
            PRVA+LFEAR PK+  +LAE +GTVSFGKETKGK RL IT   G  +E+++PK + + V 
Sbjct: 1139 PRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVF 1198

Query: 1198 EGQVVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1257
            EG+ + +G+ + DGP  P DILRL G   +  YI +EVQ+VYRLQGVKINDKHIE IVRQ
Sbjct: 1199 EGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQ 1258

Query: 1258 MLRRVVVDNIGETGYISGEQVERSEMLNTNDALRAEGKIPATFTNLLLGITKASLSTDSF 1317
            MLR+  +   G++ ++ GE VE S++   N  L  EGK PA F   LLGITKASL+T+SF
Sbjct: 1259 MLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESF 1318

Query: 1318 ISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKVKDAMDE 1375
            ISAASFQETTRVLTEAA+ GKRD+LRGLKENVIVGRLIPAGTG AYHQ R+ K A ++
Sbjct: 1319 ISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQ 1376