Pairwise Alignments

Query, 1411 a.a., DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) from Variovorax sp. SCN45

Subject, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

 Score =  233 bits (593), Expect = 8e-65
 Identities = 241/896 (26%), Positives = 379/896 (42%), Gaps = 159/896 (17%)

Query: 10  QFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYE 69
           +F   +    I  G+ SPE+IR+ S  ++   +T +   + P   GL   ++ G I    
Sbjct: 3   RFDVPKEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP-- 58

Query: 70  CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSLPSRLGLVLD 129
                       G++C+ C   V          GHI+L+ P  HI F K +   L  V  
Sbjct: 59  ------------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCP 103

Query: 130 ----MTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEYGDEFIAKMGAEGI 185
               +T+ +I+R  Y E        M  L++ G       D   KE     +     E  
Sbjct: 104 HCGKVTITEIKRDEYLEK-------MAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVK 156

Query: 186 KDLLEGI-----ELDSEIERLRGDLTGSEVKV---KKNSKRLKVLEAFRKSGIKPEWMVL 237
            D+         +LD + ++    LT SEV+    K  ++  K+L    K   +PE+MVL
Sbjct: 157 ADVKYDKPTAYHQLDGKAQK---QLTSSEVREILEKIPAEDCKLLGINAKVA-RPEFMVL 212

Query: 238 DVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRML 297
            VLPV P  +RP + L+ G  +  DL      +I  N RL   +   AP +I  +   +L
Sbjct: 213 TVLPVPPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLL 272

Query: 298 QEAVDSLLDNGRRG-KAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVG 356
           Q  +++  DN   G       + R L++LA  +KGK GRFR NL GKRV++S R+VI   
Sbjct: 273 QYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPD 332

Query: 357 PTLKLHQCGLPKLMALEL-----FKPFIFSRLEAM---------GIATTIKAAK----KE 398
           P L +++ G+PKL+A EL       P+   ++ A+         G+   +K  +    KE
Sbjct: 333 PRLSINEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKE 392

Query: 399 VESGTPV--------VWDILEEVIKEHP------VMLNRAPTLHRLGIQAFEPILIEGKA 444
            E    +        V +I + ++ E        V+ NR P+LHR+ I A +  ++  + 
Sbjct: 393 EEYKIKITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRT 452

Query: 445 IQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEARTLMLASNNVLFPASGEPSIVPSQDV 504
            + +  VC  +NADFDGD+M VHVP S EA+ EA  LML   +++ P  G P I    D 
Sbjct: 453 FRHNLCVCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDF 512

Query: 505 VLGLYYTTRDRINGKGEGLIFSDIGEVQRALDANEVELTARVAVRITEYTKNKETGEFTP 564
           + G Y  T      K E L                          +     N E GE   
Sbjct: 513 ISGAYVLTSSLFT-KDEALTL------------------------LKSSGLNVELGEPDV 547

Query: 565 STSLVDTTVGRALLSEILPKGLPFSNINKALKK--------------------------- 597
             + ++   G++L S+ LP+GL      K  KK                           
Sbjct: 548 IENNIEYYSGKSLFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVI 607

Query: 598 ------KEISKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEK-- 649
                  E   ++N   +  G ++  +F D   +   +     G +  IDD  +PAE   
Sbjct: 608 DKNGFGSEAGIVLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQ 667

Query: 650 --HGIIDRSAKEVKEIEQQYVSGLVTS-------GERYNKVVDIWGKAGDEVSKVMMAKL 700
               +++++ ++V++I ++Y +G + S         R   ++ I GKA D+   V    L
Sbjct: 668 EIQDLLNKAEQDVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYL 727

Query: 701 SKQKVIDRHGKEVEQESFNSIYMMADSGARGSAAQIRQVAGMR----------GLMAKPD 750
           SK+       +   + S  +I MMA S  + S    R   G R           L AK  
Sbjct: 728 SKENHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSH 787

Query: 751 GSIIETPITANFREGLNVLEYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDL 806
           G      + + +++GL   EYF    G R+GL D A++TA SGY+ RRLV+  QD+
Sbjct: 788 GF-----VRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDI 838