Pairwise Alignments

Query, 433 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) from Variovorax sp. SCN45

Subject, 445 a.a., ribosomal RNA small subunit methyltransferase RsmB from Dechlorosoma suillum PS

 Score =  342 bits (876), Expect = 2e-98
 Identities = 203/439 (46%), Positives = 260/439 (59%), Gaps = 37/439 (8%)

Query: 1   LTAVALASIRAGTS-GSVAFEAVEPALRPG---VQALGFQVLRWLGRAEALRRHLAKRT- 55
           L + A+A+++AG S   V  +  +  L P     Q L +  LR  G  EA+   L ++  
Sbjct: 33  LASAAVAAVQAGRSLTEVLAQQAKGELGPTRAQAQDLAYGALRRYGWGEAVLAALLQKPL 92

Query: 56  -PPPLPDALLCTALALAWDGTRAPYEPFTLVDQAVEAAKRNPATRAQASF---INACLRR 111
             P L   LLC    L       P +  T+VDQAV AA    AT A+ +F   IN  LR 
Sbjct: 93  PEPQLQSLLLCALYRLE----SRPEQSHTVVDQAVAAA----ATLAKGNFRGVINGVLRS 144

Query: 112 FLRERDELVAVTDSEPVAQWNHPRWWIERLKRDHPRDWQRVLAADNAQAPMTLRVNARKS 171
           +LR+R EL+A    +P   W HP WW+ RL+R +PRDW+ +  A N Q PMTLRVN  + 
Sbjct: 145 YLRQRPELLARAAGKPSGAWWHPDWWLSRLRRAYPRDWEAIATAGNGQPPMTLRVNLARG 204

Query: 172 TAASYLVELEAAGLSATRVGPSGLQLARARPVQQLPGFAEGASSVQDAAAQMAAPLLLEG 231
           +   Y   L+AAG++A  +G + L L +  PV  LPGF +G  SVQD  AQ AA LL   
Sbjct: 205 SREEYQARLDAAGIAAVPLGSAALLLQKPVPVDALPGFFDGFVSVQDWGAQRAAELL--- 261

Query: 232 LLPAAPGGVPLRVLDACAAPGGKTAHLLELAGPDAIDVTALEVDAVRSRRIDETLARIGL 291
              A  G    RVLDACAAPGGKTAH+LE AG   +D+ AL++D +R RR++E L+R+GL
Sbjct: 262 --DARAGQ---RVLDACAAPGGKTAHILEQAG---VDLLALDMDGLRCRRVEENLSRLGL 313

Query: 292 KARVLVADAARPADWWDRTPFDAILLDAPCTASGIVRRHPDVRWLRRESDTAQLSAQQAA 351
           +A V  ADA  P DWWD  PFD IL D PC+ASG+VRRHPD +WLRRE+D AQ +  Q  
Sbjct: 314 RAVVRAADARCPDDWWDGRPFDRILADVPCSASGVVRRHPDSKWLRRETDIAQFARVQRQ 373

Query: 352 LLAALWPLVRTGGRLLYCTCSVFREEGSQQIDAFLVHNTDARLLPSPGHLLPQSGSNARG 411
           +L  LWP +  GGRLLY TCSVF EE SQQ+ AFL  + DAR +   G         A  
Sbjct: 374 ILEVLWPTLAVGGRLLYATCSVFPEENSQQVSAFLARHGDARRIGIDG---------ADE 424

Query: 412 VPDNPSGDHDGFFYALLEK 430
           +   P  +HDGF+YALLEK
Sbjct: 425 LQLLPGSEHDGFYYALLEK 443