Pairwise Alignments

Query, 708 a.a., Type I secretion system ATPase, LssB family LapB from Variovorax sp. SCN45

Subject, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  269 bits (687), Expect = 4e-76
 Identities = 168/560 (30%), Positives = 292/560 (52%), Gaps = 11/560 (1%)

Query: 145 YQANWFWSIALRDWRRYGDIVLASVFANVLALSSMVFSMQIYDRVVPAQSESTLWVLFGG 204
           +   WF    L+  R   +I+L S    +LAL S +F   + D+V+  Q+ STL VL  G
Sbjct: 145 FDITWFIPEFLQHKRVLSEILLFSFVLQILALISPLFFQVVMDKVLVHQAWSTLDVLVFG 204

Query: 205 VMLAVAFEFLLRMSR----THISDVIGKRADLKVSDLVFGHALRVRNDARSRSTGSFIAQ 260
           +++    E +LR  R     H ++ I  +  LK+   +FG  L      +SR  G+ + +
Sbjct: 205 LVITGVIEVVLRGLREYQYAHTANRIDIQLGLKLVQHLFGLPLMF---FKSRQVGAIVTR 261

Query: 261 VREVEQVRELLTSTTIGAVADLPFFLLFVVVLWMVAGPLAWVALAAVPLLVIPGLLVQKP 320
           VRE++ +RE LT +      +L F  +F+ V+ +++ PL  + +A VP  V+    +   
Sbjct: 262 VRELDTIREFLTGSMFTLTVELLFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAWWLTPR 321

Query: 321 LARLANEGMRESALRNALLVEAVEGIEDIKLMRAEPRFQNQWNHANDVAASVSMRQRFLT 380
           +     +    +A   + L E V G E +K +  EPRF  +W+   +   +     + L 
Sbjct: 322 MQAAIEKQFSHAAANTSFLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQQLN 381

Query: 381 GLLMTWTQEVQGIVYAVVLLAGCFLVMKGEMTTGALVGSSILASRMISPLAQLSGVFARW 440
                  Q +Q I    +L  G   V+  EMT G L+  +++ + +  PLA++  ++ ++
Sbjct: 382 NRSNHLVQLLQKITSVAILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQF 441

Query: 441 QQAKVARTGLDQLMQRPVDQPEHARRVHVPALHGNYALTNAEFRYGKDDKAPALSVAQLQ 500
            Q +VA   L  ++  PV+Q   +  V    + G  +  N  FRY + D  P ++   L 
Sbjct: 442 IQTRVAIEKLGDMLNLPVEQHTGSDNV---TISGAISFKNILFRY-QPDIPPTINDLSLD 497

Query: 501 VKAGEKVALLGRMGAGKSTLLQLMAGLHAPQRGHVSLDALDLRLIDPADLRRDMGLLTQN 560
           ++AGE + ++G  G+GKSTL +L+  L++P++G +++D + L  I+   LR+ +G++ Q 
Sbjct: 498 IRAGETLGVVGTSGSGKSTLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQE 557

Query: 561 ARLFHGSIRENVTLGMPMATDTQVLEAIAMAGALPFVHSRAEGLDDLIHEGGLGLSGGQR 620
             LFH S+ EN+    P A+  +++EA  ++GA  F+     G D ++ EGG  LSGGQR
Sbjct: 558 NFLFHKSVSENIAQSKPEASLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQSLSGGQR 617

Query: 621 QALLLARTLIRQPSIVLLDEPTAHFDEVTERQVIDAVGRWLAPRTLVVATHRMPVLQWVD 680
           Q L +ARTL+  P +++LDE T+  D+ ++  +   +      RT++   HR+  ++  D
Sbjct: 618 QRLAIARTLLSDPKVLILDEATSALDDESQAVIQANMASIARGRTVITIAHRLSTVRDCD 677

Query: 681 RIVVLEGGRIVMDGSKDQIL 700
           RI+VL  G IV  GS  Q+L
Sbjct: 678 RIIVLHQGTIVEQGSHQQLL 697