Pairwise Alignments

Query, 708 a.a., Type I secretion system ATPase, LssB family LapB from Variovorax sp. SCN45

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  276 bits (705), Expect = 3e-78
 Identities = 199/704 (28%), Positives = 340/704 (48%), Gaps = 20/704 (2%)

Query: 4   RELPRQYTSW-LDAMVFVARHYGIGASEESARVTLAWERGAPLDTLLDHMARQLGLSLRL 62
           +E PR  T+W ++A+V+  + +   ++    +  L        D  +   A  LGL  ++
Sbjct: 19  QESPR--TNWGIEAVVYAGQQFHKKSTSSQLKHALGVSYANLTDMEMREAADYLGLKSQI 76

Query: 63  DAFSDAQLDPWRLPLAVEFDDGEVGVVRTSD-GKGRLGVLLGGDHGLETAVAADELRRRV 121
              S    +   LP  +E+  G   +++T D G           H L    A      +V
Sbjct: 77  TKLSIQAFNTLPLPALIEYQGGWKVMIQTDDNGWTAYDPATDSLHTLSFTSAESTAHYKV 136

Query: 122 RRVAILRPQTSVPDARVDDYIRPYQANWFWSIALRDWRRYGDIVLASVFANVLALSSMVF 181
             +A      SV + +       +  +WF    LR   +  D+ L ++   + AL S + 
Sbjct: 137 MLIA--DESLSVKEVK-------FGLSWFAPSILRQKSQLRDVFLYAIALQIFALVSPML 187

Query: 182 SMQIYDRVVPAQSESTLWVLFGGVMLAVAFEFLLRMSRTHISDVIGKRADLKVSDLVFGH 241
              + D+V+  +S S+L VL   ++     E      R  +   +  + + ++S  ++ H
Sbjct: 188 FENVIDKVLVGRSLSSLHVLALAMLALAIAEPAYSYLRNTVFGHLASQVNAELSGRLYRH 247

Query: 242 ALRVR-NDARSRSTGSFIAQVREVEQVRELLTSTTIGAVADLPFFLLFVVVLWMVAGPLA 300
            + +     + R TG  IA+VRE+ Q+R+ LT +T+  + DL F  +F+ V++  A  L 
Sbjct: 248 LVGLPLTYFKQRQTGQIIARVREMAQIRQFLTGSTLMLLLDLIFVTVFLAVMFHYASTLT 307

Query: 301 WVALAAVPLLVIPGLLVQKPLARLANEGMRES-ALRNALLVEAVEGIEDIKLMRAEPRFQ 359
           W+ + ++ +  +  L+   PL R   E   ES A     L EAV GIE IK    E RF 
Sbjct: 308 WLVIGSLVIYFVLWLIAG-PLIRKKVESEYESDANATTFLTEAVTGIETIKTTATEHRFL 366

Query: 360 NQWNHANDVAASVSMRQRFLTGLLMTWTQEVQGIVYAVVLLAGCFLVMKGEMTTGALVGS 419
            QW        + S   +    +       VQ +  A++L  G   V+KGE+T G LV  
Sbjct: 367 EQWQRILSQQLNRSFDAQKSGLIAGQAIALVQKLTAALLLWWGVSAVLKGEITPGQLVAF 426

Query: 420 SILASRMISPLAQLSGVFARWQQAKVARTGLDQLMQRPVDQPEHARRVHVPALHGNYALT 479
           ++LA  +  P+ +L+ ++  +Q   +A   +  ++  P +  +      VP L G    +
Sbjct: 427 NMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDILDEPRENSKQGL-ASVPELDGGIEFS 485

Query: 480 NAEFRYGKDDKAP-ALSVAQLQVKAGEKVALLGRMGAGKSTLLQLMAGLHAPQRGHVSLD 538
           N  FRY +D  AP  L+   L++K G+ + + G  G+GKSTL +L+  L+ PQ G V +D
Sbjct: 486 NIRFRYHQD--APEVLANLSLKIKPGQFIGVTGPSGSGKSTLTRLLQRLYVPQHGQVLVD 543

Query: 539 ALDLRLIDPADLRRDMGLLTQNARLFHGSIRENVTLGMPMATDTQVLEAIAMAGALPFVH 598
            +DL + DP  LRR+M ++ Q + LF GS+ +N+ L  P A+D ++  A  +AGAL F+ 
Sbjct: 544 GMDLAIADPVSLRRNMSVVLQESILFSGSVADNIRLCKPQASDEEIRHAAQLAGALAFIE 603

Query: 599 SRAEGLDDLIHEGGLGLSGGQRQALLLARTLIRQPSIVLLDEPTAHFDEVTERQVIDAVG 658
               G +  + E G  LSGGQRQ + LAR L+  P I+LLDE T+  D  +E  ++  + 
Sbjct: 604 GLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPRILLLDEATSALDYNSEASIMSNMD 663

Query: 659 RWLAPRTLVVATHRMPVLQWVDRIVVLEGGRIVMDGSKDQILGK 702
                RT++   HR+  ++  D I VL+ G++   G+ +++L +
Sbjct: 664 EICRGRTVISIAHRLNTIRHADNIFVLDKGQVAESGTHEELLAQ 707