Pairwise Alignments

Query, 418 a.a., Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC from Variovorax sp. SCN45

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella loihica PV-4

 Score =  259 bits (661), Expect = 2e-73
 Identities = 157/433 (36%), Positives = 232/433 (53%), Gaps = 64/433 (14%)

Query: 48  LVVWIVAAMLAALLAWAWFFKLDEVSTGTGKVVPSSREQMIQSLEGGILVDLKVREGDIV 107
           L++W +AA+  + L WA+F +LD V+TGTGKV+PSS+ Q+IQSL+GGI+ +L VREG  V
Sbjct: 30  LIIWALAALAFSFLVWAYFAELDRVTTGTGKVIPSSQVQVIQSLDGGIMKELYVREGMTV 89

Query: 108 SAGQVLAQLDRTKTESTVQESASRVRAALAMSARLTAEVNGT------------------ 149
           + GQ L ++D T+  S   +    V +  A   RL AE+N                    
Sbjct: 90  TKGQPLVRIDDTRFRSDFAQQEQEVYSLQANVIRLRAELNSITISDVAADWREQVKIAKQ 149

Query: 150 PLVFPDEV-RGEPGLVRTETALYQSR---------------------REQLASSLAGVNQ 187
           PL FP E+   E  L+  +   Y  R                      E+LAS +  +  
Sbjct: 150 PLQFPPELTESEHDLIERQRDEYSGRLDNLSNQLEILARQIQQKQQETEELASKINTLTT 209

Query: 188 ALVLMRRELALTEPLVSRGAASDVEVLRLKRQINEAETKAADLR--------SQ------ 233
           +  L+ REL LT PL  +G   +VE+L+L+R +N+   + + LR        SQ      
Sbjct: 210 SFQLVTRELELTRPLADKGIVPEVELLKLERNVNDIRGELSSLRLLRPKLKASQDEAILK 269

Query: 234 -------YYVKAREDLAKANAEIEAQRSVTRGRSDSLTRLTFASPVRGIVKDIVVTTVGG 286
                  Y  +AR  L +    +        G  D +++    SPV G +K + + T+GG
Sbjct: 270 RREAVFVYAAEARTQLNEMQTRLSRINEAQVGARDKVSKAEIVSPVNGTIKTVHINTLGG 329

Query: 287 VLPPGGKLMEIVPLDEKLLVEARISPRDVAFIHPGQDATVKVTAYDYAIYGGLPGKVTTI 346
           V+ PG  ++EIVP +++LL+E +I P+D+AF+HPG  A VKVTAYD+  YGGL G V  I
Sbjct: 330 VVQPGIDIIEIVPSEDQLLIETKIIPKDIAFLHPGLPAVVKVTAYDFTRYGGLNGVVEHI 389

Query: 347 SPDTIQDDVKRDVYYYRVYIRTDADHLKNRSGRSFPIVPGMIATVDIHTGSKTVLDYLIK 406
           S DT QD+      +Y V +RT+   L    G   PI+PGM+ TVD+ TG ++VL+Y++ 
Sbjct: 390 SADTTQDEEGNS--FYLVRVRTELSSLTKDDGTLMPIIPGMLTTVDVITGQRSVLEYILN 447

Query: 407 PLNKASE-ALRER 418
           P+ +A + ALRER
Sbjct: 448 PILRARDTALRER 460