Pairwise Alignments

Query, 700 a.a., ATP-dependent DNA helicase Rep from Variovorax sp. SCN45

Subject, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

 Score =  538 bits (1387), Expect = e-157
 Identities = 322/702 (45%), Positives = 430/702 (61%), Gaps = 54/702 (7%)

Query: 5   LNPAQLEAVNYMYGPCLVLAGAGSGKTRVITHKIGRLIQS-GLEPQRIAAITFTNKAAAE 63
           LNP Q EAV Y+ GPCLVLAGAGSGKTRVIT+KI  L+Q  G + + IAA+TFTNKAA E
Sbjct: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62

Query: 64  MRERAKDLIGK-DARKVVVCTFHALGVRMMREDGAVLGLKKAFSILDSDDVTKILKDA-- 120
           M+ER    +GK ++R ++V TFH LG+ ++R +   LGLK  FS+ D  D   +LK+   
Sbjct: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122

Query: 121 ---GGTTDIATARIWQWTISKWKNMGLNAKQAEAAAVDDNERITARIMAHYEERLQAYQS 177
               G  D+   R+   TIS WKN  L   QA+A A  + + + A     Y++++Q+Y +
Sbjct: 123 KQLDGDKDLL--RLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNA 180

Query: 178 VDFDDLIGMPLKLLYEFPEVRAKWQAALGHILVDEYQDTNATQYEVLKALAGERGHFTAV 237
           +DFDDLI +P+ LL    EVR +WQ  + ++LVDEYQDTN +QYE++K L GERG  T V
Sbjct: 181 LDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVV 240

Query: 238 GDDDQSIYGWRGATLDNLRKLPVDFPTLKVIKLEQNYRSTSAILRAANNVIGPNPKLFPK 297
           GDDDQSIY WRGA   NL  L  DFP+LK+IKLEQNYRSTS ILRAAN +I  NP ++ K
Sbjct: 241 GDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQK 300

Query: 298 TLFSELGEGEPVRIVDADSELHEAERAVARIVSLRAGDATTQGKQYKEFRDFAILYRANH 357
            LFSEL EGE ++++ A++E HEAER +A I++ +  + T       E+RD+AILYR NH
Sbjct: 301 ALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRT-------EYRDYAILYRGNH 353

Query: 358 QARVFEQALRKAQIPYKVSGGQSFFDRAEIKDLCGWFRLWVNNDDDPAFLRAITTPKRGI 417
           Q+R+ E++L + ++PYK+SGG SFF RAEIKD+  + R+ VN DDD AFLR + TPKR I
Sbjct: 354 QSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREI 413

Query: 418 GHTTLASLGSFASQYKLSLFEALFSPSLPSVMPKRTLEGIHEFGRYINDLEYRARRTMGA 477
           G  TL  LGS+A+    SLF A F   L   +  R LE +  F  ++  +   A R    
Sbjct: 414 GPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTV 473

Query: 478 EDSRTFMLDWLKEIDYEKHLYDGEDSESAAASRWTNVLEFVDWMSQRAGGTIDDTSGADN 537
           E  R      +++I YE  LY+   S  AA  R  NV +   W+       + D  G DN
Sbjct: 474 EAVRAL----VRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWI-------VADLEG-DN 521

Query: 538 PIETERKSLLEVAQTISLLSTI--SERQQDQDVVTLSTLHASKGLEWPHVMLIGVSEGLL 595
           P + + K+L EV Q ++L   +   E   D D V L TLHASKGLE+P+V LIG  EG+L
Sbjct: 522 P-DQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGIL 580

Query: 596 PFKLDDDNGRQQKVSEDTLQRLQEERRLMYVGITRAQRSLAVSWTKKRKQGREMVPCVPS 655
           P +   D            + ++EERRLMYVGITRAQR L     K+R+Q  E++    S
Sbjct: 581 PHQTSIDE-----------ENVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQS 629

Query: 656 RFIAEMGLD--------KATTREDPREKLKA----LRAEFAR 685
           RF+ E+  D        K  T+E+   K +A    LRA F +
Sbjct: 630 RFLDELPQDDIEWEVKKKPVTQEERMAKGQAHIANLRAMFKK 671