Pairwise Alignments

Query, 700 a.a., ATP-dependent DNA helicase Rep from Variovorax sp. SCN45

Subject, 689 a.a., UvrD2 DNA helicase from Sinorhizobium meliloti 1021

 Score =  197 bits (500), Expect = 2e-54
 Identities = 188/674 (27%), Positives = 302/674 (44%), Gaps = 103/674 (15%)

Query: 5   LNPAQLEAVNY--------MYGPCLVLAGAGSGKTRVITHKIGRLIQSGLEPQRIAAITF 56
           LN  Q  AV Y          GP L++AGAGSGKT  + H++  LI +G +P+RI  +TF
Sbjct: 10  LNERQRCAVEYGIGAEEGAQAGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRILLMTF 69

Query: 57  TNKAAAEMRERAK----DLIGKDARKVVVC-----TFHALGVRMMREDGAVLGLKKAFSI 107
           + +AAAEM  R +     ++G+ +  +        TFH +G R++R     +GL   F+I
Sbjct: 70  SRRAAAEMSRRVERICAQVLGRSSGMMTDALSWAGTFHGIGARLLRIYAEQIGLNAEFTI 129

Query: 108 LDSDDVTKILK-----------DAGGTTDIATARIWQWTISKWKNMGLN-AKQAEAAAVD 155
            D +D   ++            ++   T      I+  T++    M LN   ++    V 
Sbjct: 130 HDREDSADLINLIRHELGFSKTESRFPTKGTCLAIYSRTVNA--EMRLNEVLRSWYPWVA 187

Query: 156 DNERITARIMAHYEERLQAYQSVDFDDLIGMPLKLLYEFPEVRAKWQAALGHILVDEYQD 215
             E+    + A Y E  QA   +D+DDL+    +++ +   +         ++LVDEYQD
Sbjct: 188 GWEQQLQELFAGYVEAKQAQNVLDYDDLLLYWAQMVSD-ASLADDIGNRFDYVLVDEYQD 246

Query: 216 TNATQYEVLKALAGERGHFTAVGDDDQSIYGWRGATLDNLRKLPVDF-PTLKVIKLEQNY 274
           TN  Q  VL AL  +    T VGDD QSIY +R AT+ N+   P  F P  +++ L++NY
Sbjct: 247 TNKLQSSVLLALKPDGRGLTVVGDDAQSIYSFRAATVRNILDFPKQFAPAAEIVTLDRNY 306

Query: 275 RSTSAILRAANNVIGPNPKLFPKTLFSELGEGEPVRIVDADSELHEAERAVARIVSLRAG 334
           RST  IL AAN VI    + F K L+++    E  +++    E  +A   V ++++ R  
Sbjct: 307 RSTQPILAAANGVIDLARERFTKNLWTDRESAERPKLLTVKDEADQANCIVEQVLANRES 366

Query: 335 DATTQGKQYKEFRDFAILYRANHQARVFEQALRKAQIPYKVSGGQSFFDRAEIKDLCGWF 394
               + +        A+L+R +  +   E  L +  IP+   GG  F D A +K      
Sbjct: 367 GMLLKQQ--------AVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVK------ 412

Query: 395 RLWVNNDDDPAFLRAITTPK-RGIGHTTLASLGSFASQYKLSLFEALFSPSLPSVMPKRT 453
                  D  A LR    P+ R  G   L  L     Q    + + + +   P +     
Sbjct: 413 -------DMLAVLRFAQNPRDRVAGFRLLQMLPGVGPQTAGKILDTIAADPEPLMALGEV 465

Query: 454 LEGIHEFGRYINDLEY-RARRTMGAEDSRTFMLDWLKEID-----YEKHLYDGEDSESAA 507
                    +++ +E  +A R  G+         W  EI+     YE HL   E     A
Sbjct: 466 PAPPRSGTDWMSLVELLQALRKPGSA--------WPTEIEMARMWYEPHL---ERIHEDA 514

Query: 508 ASRWTNVLEFVDWMSQRAGGTIDDTSGADNPIETERKSLLEVAQTISLLSTISERQQ--- 564
            +R  ++++    + Q A G             +  + L E+  T+      S++     
Sbjct: 515 ETRRADLVQ----LEQIAAG-----------YPSRERFLTEL--TLDPPDATSDQAGVPL 557

Query: 565 -DQDVVTLSTLHASKGLEWPHVMLIGVSEGLLPFKLDDDNGRQQKVSEDTLQRLQEERRL 623
            D+D + LST+H++KG EW  V ++ V +G +P  L          +  T   L+EERRL
Sbjct: 558 LDEDYLILSTIHSAKGQEWRSVFMLNVVDGCIPSDL----------ATGTSHELEEERRL 607

Query: 624 MYVGITRAQRSLAV 637
           +YVG+TRA+  LA+
Sbjct: 608 LYVGMTRAKDQLAL 621