Pairwise Alignments

Query, 700 a.a., ATP-dependent DNA helicase Rep from Variovorax sp. SCN45

Subject, 726 a.a., DNA-dependent helicase II (RefSeq) from Shewanella loihica PV-4

 Score =  359 bits (921), Expect = e-103
 Identities = 254/667 (38%), Positives = 348/667 (52%), Gaps = 48/667 (7%)

Query: 4   GLNPAQLEAVNYMYGPCLVLAGAGSGKTRVITHKIGRLIQSGLE-PQRIAAITFTNKAAA 62
           GLN  Q EAV       LVLAGAGSGKTRV+TH+I  L+Q   + P  I A+TFTNKAAA
Sbjct: 9   GLNDKQREAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNKAAA 68

Query: 63  EMRERAKDLIGKDARKVVVCTFHALGVRMMREDGAVLGLKKAFSILDSDD----VTKILK 118
           EMRER + + G +  ++ + TFH L  R++R       L ++F ILDSDD    + +ILK
Sbjct: 69  EMRERVEKVSGSNMGRMWIGTFHGLAHRLLRTHYQDANLPQSFQILDSDDQLRLIKRILK 128

Query: 119 DAGGTTDIATARIWQWTISKWKNMGLNAKQAEAAAVDDNERITARIMAHYEERLQAYQSV 178
                      R  Q  I+  K+ GL  K  +A      + +  +I   Y+E       V
Sbjct: 129 SLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLL-KIYQVYQESCDRAGLV 187

Query: 179 DFDDLIGMPLKLLYEFPEVRAKWQAALGHILVDEYQDTNATQYEVLKALAGERGHFTAVG 238
           DF +++    +L    P +   +Q    +ILVDE+QDTNA QY  ++ LAG   +   VG
Sbjct: 188 DFAEILLRAHELWLNKPHILEHYQERFKNILVDEFQDTNAIQYAWIRVLAGSTANVMIVG 247

Query: 239 DDDQSIYGWRGATLDNLRKLPVDFPTLKVIKLEQNYRSTSAILRAANNVIGPNPKLFPKT 298
           DDDQSIYGWRGA ++NL +   DFP  + I+LEQNYRS+  IL A+N +I  NP    K 
Sbjct: 248 DDDQSIYGWRGAQVENLHRFLQDFPAAQTIRLEQNYRSSGNILNASNELIANNPDRLGKK 307

Query: 299 LFSELGEGEPVRIVDADSELHEAERAVARIVSLRAGDATTQGKQYKEFRDFAILYRANHQ 358
           L++E  +GE + +  A +E+ EA   V RI        T          D AILYR+N Q
Sbjct: 308 LWTEDKDGEKIGLYCAFNEMDEARFIVGRI--------TDWQDMGGNLSDCAILYRSNAQ 359

Query: 359 ARVFEQALRKAQIPYKVSGGQSFFDRAEIKDLCGWFRLWVNNDDDPAFLRAITTPKRGIG 418
           +RV E+AL    + Y++ GG  FF+R EIKD  G+ RL  N +DD AF R I TP RGIG
Sbjct: 360 SRVLEEALLHKGMAYRIYGGLRFFERQEIKDAMGYLRLISNKNDDAAFERIINTPTRGIG 419

Query: 419 HTTLASLGSFASQYKLSLFEALFSPSLPSVMPKRTLEGIHEFGRYINDLEYRARRTMGAE 478
             TL  L S A Q +L+L++         V+  R    +  F   I  L+        AE
Sbjct: 420 DRTLDILRSTARQQELTLWQTCLRLLDEKVLSGRAANAVRSFMDLIVTLQQET-----AE 474

Query: 479 DSRTFMLDWLKEIDYEKHLYDGEDSESAAASRWTNVLEFVDWMSQRAGGTIDDTSGADNP 538
            S   M D + +    K +Y+ E  E A A R  N+ E V             T+     
Sbjct: 475 QSLHRMTDHVIQASGLKAMYEAEKGEKARA-RVENLEELV-------------TAARTFV 520

Query: 539 IETERKSLLEVAQTISLLS-TISERQQD--QDVVTLSTLHASKGLEWPHVMLIGVSEGLL 595
           +  + + + E+   +S  +    E Q D   D V L TLH++KGLE+P V + GV EG+ 
Sbjct: 521 MPEDLEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGIF 580

Query: 596 PFKLDDDNGRQQKVSEDTLQRLQEERRLMYVGITRAQRSLAVSWTKKRK-QGREMVPCVP 654
           P ++  D G           RL EERRL YVG+TRA + L +++ + R+  GRE     P
Sbjct: 581 PSQMAMDEG----------DRLDEERRLCYVGMTRAMKQLYITYAESRRIYGRENY-ARP 629

Query: 655 SRFIAEM 661
           SRFI E+
Sbjct: 630 SRFIKEI 636