Pairwise Alignments

Query, 726 a.a., Helicase PriA essential for oriC/DnaA-independent DNA replication from Variovorax sp. SCN45

Subject, 731 a.a., primosomal protein N' (RefSeq) from Shewanella loihica PV-4

 Score =  385 bits (990), Expect = e-111
 Identities = 234/561 (41%), Positives = 321/561 (57%), Gaps = 34/561 (6%)

Query: 168 LSAEQTAALERIEAASGTF--LLVGSTGSGKTEVYLRCVADLLAREPEAQALVMVPEINL 225
           L+ EQ  A+  +    G    LL G TGSGKTEVYL  +  +L +    QAL++VPEI L
Sbjct: 202 LNPEQAIAVAMLNQQQGYHCTLLEGITGSGKTEVYLALLETVLKQGK--QALILVPEIGL 259

Query: 226 TPQLEARFKARFGEEAVVSLHSGMTNPQRLASWLAAHSGGARIVLGTRMAVFASIPGLKL 285
           TPQ  +RFK RF  +  V +HSG+T+ QRL++W  A SG A I++GTR A+F  +    +
Sbjct: 260 TPQTISRFKRRFKVQVAV-IHSGLTDNQRLSAWRLARSGEAAIIIGTRSALFTPMRYPGI 318

Query: 286 IVVDEEHDPSYKQQEGARYSARDLAVWRGQREGAKVILGSATPSFESWHQSRPAEGDDPG 345
           I++DEEHD S+KQQEG  Y ARDLAV RG  E   V+LGSATPS E+   +         
Sbjct: 319 IILDEEHDASFKQQEGIGYHARDLAVMRGHLESIPVLLGSATPSLETLQNAL-------S 371

Query: 346 GRYVRLAMPSRIGAGELPAVRLVDMNLQPPKTVISGALLDAIGQRIARGEQSMIFLNRRG 405
           GRY  L++ SR GA E     ++D+  QP K  +S  LL+ +   +  G Q ++FLNRRG
Sbjct: 372 GRYQHLSLGSRAGAAEKVRQGIIDIRNQPLKNGLSHGLLNEMRIHLDAGNQVLLFLNRRG 431

Query: 406 YAPVLACGDCGWKSECPHCSAYRVFHKIDRTLRCHHCGFTERVPRACPACGNPDIAPVGR 465
           +AP L C +CG   EC  C A+   H+    +RCHHCG    +PR C  CG+  +   G 
Sbjct: 432 FAPALLCHECGHLHECDRCDAFFTVHQSLGEIRCHHCGNQYAIPRQCHQCGSTMLMGQGV 491

Query: 466 GTERLEEHLAELFAAVKRPDGGAVRIARIDADSTRKQGALESQLAAVHSGEVDVLVGTQM 525
           GTE+L + LA+ F            + RID D+T ++GALE+ L A+H GE  +LVGTQM
Sbjct: 492 GTEQLADALAKEFPNYP--------VVRIDRDTTSRKGALETHLNAIHKGEYKILVGTQM 543

Query: 526 IAKGHDFRRITLVAAVNPDGALFSSDFRAPERLFSLLMQSAGRAGRDAAYLASQGATAEM 585
           +AKGH F  +TLV  ++ DGALFS+DFRAPER   L  Q +GRAGR     A +  T  +
Sbjct: 544 LAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVSGRAGR-----ARKPGT--V 596

Query: 586 WIQTHHAQHPLFMALRQHDYAVFARQQLDERRAAGMPPFAFQALLRADAREQSVAQAFLN 645
            +QTH   +P+   L    Y  FAR QL+ER+ A +PP     LLRA+A +   A AFL 
Sbjct: 597 LLQTHQCDNPILRELMHKGYGEFARGQLEERKQALLPPAWHMLLLRAEAHKAEDADAFL- 655

Query: 646 IAADQAEALPGADLVTRYPAVPLAIQRVANVERAQMLIESPSRAALQRLLAGWQPLLHEL 705
             A  A+ LP  +       +P  + R A   R Q++ ++ +R  LQ+    ++  L ++
Sbjct: 656 --AQVAQLLPQDEQCEIIGPMPAPMDRKAGKFRRQLMFQTKTRGLLQQ---AFEQALPQI 710

Query: 706 RRTPEGKGVIRWLVDVDPHSI 726
              P  K   RW +D DP  +
Sbjct: 711 EALPLAKR-CRWSLDRDPQDL 730



 Score = 43.5 bits (101), Expect = 4e-08
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 19/166 (11%)

Query: 32  LDIAVQTPAHAALGDLLSYASAGPLPPGTLVRVPLGKREVLGVVWNEPVSLEGAEPDMAL 91
           +++A+  P   A    +  A       G  VRVP G+++++G+V     S + A     +
Sbjct: 5   VEVALPVPMRQAFSYRVKEADLDKAQVGVRVRVPFGRQQLIGLVTGLSQSCDLAPNQ--I 62

Query: 92  KPVGAALDALAPLGEAWRDLVAFAGRYYQRSIGEIALAALPPQLR---DLTTTQLARRLK 148
           K V   LD    L  +   L  +A RYY  S+G++   ALP  LR   ++   QL  ++ 
Sbjct: 63  KSVITFLDHEGVLPPSLYKLTQWAARYYFCSLGQMLSQALPVALRKGAEVEAQQL--QVW 120

Query: 149 RKTTAGPVAE-------TAESANLIA-----LSAEQTAALERIEAA 182
           R T AG  A+        A+   L+A     LS ++  ALE+ + A
Sbjct: 121 RVTAAGQEADIDLLKRAPAQRKLLLALLETELSQDELNALEQSKTA 166